Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g2288 ATGATAGCCATATATATGAGATTATTATCATTCCTGTCCGTTCAATCTCCCGATGTCTGCGAGATCATGCAGTTTGACGGAACGACAGCTCATATAGACCGAGTCTTGAAATCGCAATCCTTTGGGCGATTACATGTACCGTTGGTTGAAACTCAACTCTCGATTCATTTTCGTGGGGGTTTCCCGATGTTGCTTCGTACACTCGTGGTCCTCGATACTGCAGAGCAGAGCATCCCCTGTTCTAGAAGGATGGATCATCAAGGGCATAACCAGAACCAATCTTTGGATCATCATCAACTGCCTTATGCCTCGAACCCATACCAGCAGACCCAAATAACTGCTACACCGGGATCCACCGTCACATCAGTTGGGACAATTCAATACAGTGGTCAGCCTGCCGCCGGAGCTCAAGTGGGACAACACCAACTTGCTTATCAGCACATTCACCAGCAACAGCAGCAGCAACTTCAGCAACAACTCCAAAACTTTTGGGCTAATCAGTACCAAGAAATCGAGAAGGCGACTGATTTCAAGAATCACAGCCTTCCCTTGGCCAGGATCAAGAAGATTATGAAAGCTGATGAGGATGTTCGAATGATATCAGCCGAGGCGCCAGTCATATTTGCAAGGGCGTGTGAGATGTTTATACTGGAGCTAACTTTGCGTTCTTGGAATCACACTGAAGAGAACAAGAGGAGAACACTTCAGAAGAACGATATTGCAGCAGCAATCACAAGGACTGATATATTTGATTTCTTGGTGGATATTGTGCCGCGTGAGGATTTGAAAGATGAAGTGCTTGCATCAATCCCAAGAGGGACAATGCCCGTGGCAGGGCCTGCTGATGCAATTCCTTATTGTTACATGCCACCTCAGCAGGCACCGCAAGTAGGCGCGGCTGGTGTCATAATGGGTAAGCCTGTGATGGACCCGACCATTCGAGCTTTGCTGAGTTTCTTCCCGAAGTTTGTTTCATTTGACCAGTTACATTTATCTTTACTCCTTTTATTTCGGAGGTTTAACAATTACAGTTATTGTGCTGATTTGGCGCCTGATTTCTGGCTTGCAGATTACTGGCGCAGTGCGATGAGGTTAGAACGTCAAATTGAGAGGGCTGTTGAGAAAGCCCTTGGCACTCGGTGA 1143 0.4672 MIAIYMRLLSFLSVQSPDVCEIMQFDGTTAHIDRVLKSQSFGRLHVPLVETQLSIHFRGGFPMLLRTLVVLDTAEQSIPCSRRMDHQGHNQNQSLDHHQLPYASNPYQQTQITATPGSTVTSVGTIQYSGQPAAGAQVGQHQLAYQHIHQQQQQQLQQQLQNFWANQYQEIEKATDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEVLASIPRGTMPVAGPADAIPYCYMPPQQAPQVGAAGVIMGKPVMDPTIRALLSFFPKFVSFDQLHLSLLLLFRRFNNYSYCADLAPDFWLADYWRSAMRLERQIERAVEKALGTR 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g2288 380 FunFam Nuclear transcription factor Y subunit gamma 146 259 - -
Lele13g2288 380 Pfam Core histone H2A/H2B/H3/H4 141 244 IPR007125 GO:0003677
Lele13g2288 380 Gene3D Histone, subunit A 143 259 IPR009072 GO:0046982
Lele13g2288 380 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 139 268 - -
Lele13g2288 380 SUPERFAMILY Histone-fold 152 253 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g2288 Lele-ChrLele13 28902884 28906662 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g2288 84 307 CCAAT-HAP5 Transcription Factor Family AT1G08970 63.556 1.36e-84 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Lele13g2288 CBFD_NFYB_HMF 1.1e-17 CL0012
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g2279 13 28867711 28873426 Lele13g2288 13 28902884 28906662 CCT
Lele14g2214 14 27217885 27225146 Lele13g2288 13 28902884 28906662 CCT
Lele15g0133 15 791843 797432 Lele13g2288 13 28902884 28906662 CCT
Lele16g0141 16 817117 826529 Lele13g2288 13 28902884 28906662 CCT
Lele13g2288 13 28902884 28906662 Lele13g2288 13 28902884 28906662 ECH
Lele13g2288 13 28902884 28906662 Lele15g0125 15 755441 759169 hybridization