Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g2284 ATGGCTTCCGGTGACCAACAATTTCCCCCACAGAAACAACACAAACTTCCCGGGAAAGAGCATGCTATGGATCCGATACCTCAATTCACCAGCCCCGACTACATGCCCTCAAATAAACTTCAAGGGAAGATGGCACTGATTACCGGCGGTGACTCTGGGATTGGACGAGCCGTATGCAATTTGTTTGCATTGGAGGGTGCCAGCGTGGCCTTCACATATGTGAAGGGACATGAAGAGAAGGACGCGAAGGACACGCTTGAAATGATCAAGAAGACAAAAACTGCGGATGCCAAGGAGCCCATAGCCATACCGGCTGACTTGGGTTTCGATGAAAGCTGCAAGAAAGCAGTGGATGACGTCGTCAAAGCGTTCGGCCGCATTGACATTCTGATCAACAATGCAGCTGAGCAATACGAGGCTGGATCTGTGGAGGAGATTGACGAGAAAAGGCTGGAGAGGGTGTTCAGAACTAATATCTTCTCCTATTTCTTCGTGACCAGGCATGCCCTGAAGCACATGAAGGAAGGAAGCAGCATCATTAACACGACATCAGTGAATGCATACAAAGGAAACGCCAAATTACTGGACTACACGGCGACGAAGGGTGCCATTGTGGCGTTTACGAGGGGTCTGTCTCAACAACTGGTGAGCAAGGGAATAAGAGTGAACGGGGTTGCCCCAGGACCCATATGGACTCCGCTAATACCCGCCTCCTTCGAGGAGGAAGAAGTAGCTGAATTTGGAGCTCAGGTGCCAATGAAGAGAGCTGGCCAACCTATCGAGGTTGCTCCCTCCTATGTATTTCTTGCCTGCAATCAGTGCTCCTCTTACGTTACTGGCCAAGTCCTTCACCCCAATGGTGGAACTGTTGTAAATGGCTGA 882 0.5034 MASGDQQFPPQKQHKLPGKEHAMDPIPQFTSPDYMPSNKLQGKMALITGGDSGIGRAVCNLFALEGASVAFTYVKGHEEKDAKDTLEMIKKTKTADAKEPIAIPADLGFDESCKKAVDDVVKAFGRIDILINNAAEQYEAGSVEEIDEKRLERVFRTNIFSYFFVTRHALKHMKEGSSIINTTSVNAYKGNAKLLDYTATKGAIVAFTRGLSQQLVSKGIRVNGVAPGPIWTPLIPASFEEEEVAEFGAQVPMKRAGQPIEVAPSYVFLACNQCSSYVTGQVLHPNGGTVVNG 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g2284 293 FunFam Short-chain dehydrogenase reductase 31 292 - -
Lele13g2284 293 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 41 291 IPR036291 -
Lele13g2284 293 PANTHER NADPH-DEPENDENT ALDEHYDE REDUCTASE-LIKE PROTEIN, CHLOROPLASTIC-RELATED 17 288 - -
Lele13g2284 293 MobiDBLite consensus disorder prediction 1 32 - -
Lele13g2284 293 Gene3D - 2 291 - -
Lele13g2284 293 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 184 212 IPR020904 GO:0016491
Lele13g2284 293 Pfam Enoyl-(Acyl carrier protein) reductase 52 288 - -
Lele13g2284 293 CDD SDR_c1 17 292 - -
Lele13g2284 293 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 177 185 IPR002347 -
Lele13g2284 293 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 197 216 IPR002347 -
Lele13g2284 293 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 125 136 IPR002347 -
Lele13g2284 293 PRINTS Glucose/ribitol dehydrogenase family signature 125 136 IPR002347 -
Lele13g2284 293 PRINTS Glucose/ribitol dehydrogenase family signature 44 61 IPR002347 -
Lele13g2284 293 PRINTS Glucose/ribitol dehydrogenase family signature 218 235 IPR002347 -
Lele13g2284 293 PRINTS Glucose/ribitol dehydrogenase family signature 252 272 IPR002347 -
Lele13g2284 293 PRINTS Glucose/ribitol dehydrogenase family signature 197 216 IPR002347 -
Lele13g2284 293 PRINTS Glucose/ribitol dehydrogenase family signature 171 187 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g2284 Lele-ChrLele13 28887644 28888775 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g2284 36 293 Acyl Lipid Metabolism Gene Families AT1G63380 27.925 6.40e-26 102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g2274 13 28841051 28842515 Lele13g2284 13 28887644 28888775 CCT
Lele14g2209 14 27185234 27186701 Lele13g2284 13 28887644 28888775 CCT
Lele15g0137 15 821579 823031 Lele13g2284 13 28887644 28888775 CCT
Lele16g0144 16 841010 859880 Lele13g2284 13 28887644 28888775 CCT
Lele13g2284 13 28887644 28888775 Lele15g0129 15 772158 773291 hybridization
Lele13g2284 13 28887644 28888775 Lele16g0138 16 803681 804818 hybridization