LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele13g2279	ATGAGTGTTGATCTGGAATCGTTAGCGGAGGCGACCTCTGGCGCCATAGGATCACTCTTGAGCACGACCATCTTGTACCCTCTTGACACCTGTAAGACCAAGTACCAAGCCGAGGCTCGGGCTCATGGCAACCAAAAATATAGGAACCTCTCTGATGTGTTATGGGAAGCAATATCTTCCCGTCAGGTGCTTTCGCTTTATCAGGGTCTGGGAACAAAAAACCTTCAATCCTTCATTTCGCAATTTGTCTACTTCTATGGCTACAGCTACTTTAAAAGAATGTATCTGCGGAAGAGCGGTTCTAAGCGTATTGGAACCAAAGCAAACTTGGTCATTGCTGCTGCTGCTGGTGCCTGCACTGCCATTGTAACTCAGCCCCTGGATACAGCCTCTTCAAGGATGCAGACGAGTGATTTTGGAAAATCTAAAGGTCTTTTGAAGACCCTTACAGAAGGCACTTGGAGCGATGCATTTGATGGTCTCAGTATTTCCTTACTGTTGACCTCAAACCCAGCAATTCAGTATACAGTTTTTGATCAGCTGAAACAGCGAGCCCTGAAGAATCAGGAAAACAGCGTAGACAGAGGATCATCTCCAGCATCCCTTTCTGCATTTATGGCCTTTCTCTTGGGAGCTATTTCGAAGAGTGTTGCTACCGTCTTAACGTATCCAGCTATCAGGTGCAAGGTGATTATTCAAGCTGCTGACAATGAGGAAAAATCAGCTTCGAAACCACAGAAAAAGTCAGGGAAAACAGTTTGTGGAGTTCTCTGGTCTATATGGCAAAGGGAGGGCTTACCGGGTTATTTCAAAGGATTGCATGCTCAAATCTTAAAGACTGTTTTGAGCTCAGCATTGCTTTTGATGATAAAGGAGAAGATATCTGCCACTACTTGGGTACTTATACTTGCAGTTAGAAGGTCACTGTTGCTCCCAAAGGGTAGAGTTTTAGCTACTGCTTTTGAGGGGTATGGGAACCGTGAGGAGAGGAAAGCTGCAGGAGGAGGAGGAAGAGCAAAGTACAGGAGACACAAGATGATGTCAGGAAAGTATACAACAATTGATGATCAACATGTTTCGGGATCTGTACCTGCTGTTTCAGATCCGGGACAGGTTACCGTGAAGTTCACAGACACCAATCTTCAGGCATTTCCCCCTTCTGTACCATCAGGGAAGATTTCTGGTGGTTCGTGGCCTCTTCGTCATACTGATGATACATTTTCCAATCCTGTATCTGGTTCTGATCAACCCCAGCAGGGTGGCTGGATTCGAGCTTTCACAGTAGCTGCATACAAACCGTACTTTGATATTGACACTTCAGATGTTCTTGAGAGGATTAAAGAGTCGCTCTTTCCATTTAGAGGAACCTTCAATGAAAAAATCGCTAGCAATCCTGATCTGTATGGGCCTTTCTGGATCTGTACTACTTTAATATTTGTAGCAGCGTCTATTGGCACATTTGTGACATATATAGCACACAAGTTGAAGAACAAGGAATGGAGCTATGACATAAATCTGGTGACTTGGGCAGCTGGTTTGTTTTATGGTTATGTCACCATCGTTCCTCTTTGTCTGTATGTAATCCTCAAATACTTATCTGCACCATTCAGCCTTGTTCAATTATTCTGTCTCTACGGATATTCCATTTTTGTCTTTATTCCGGCTTTGTGCATGTCAATTGTGCCATTGGAGATCTTCAGATGGGCGATTGCAGGTGTGGCTGGATTCATGTCTGCAACATTTGTGGCACTTAACCTCCGTGCACATATAGAATCTGCAGGAGAAAGGTGGTTCTTGATTGTTGCTGGCATCTTTGTATTGCAGCTGGCTCTAGCTGTTGTCCTAAAGTTGTATCTCTTCACAGTATCAGTTTGA	1875	0.4421	MSVDLESLAEATSGAIGSLLSTTILYPLDTCKTKYQAEARAHGNQKYRNLSDVLWEAISSRQVLSLYQGLGTKNLQSFISQFVYFYGYSYFKRMYLRKSGSKRIGTKANLVIAAAAGACTAIVTQPLDTASSRMQTSDFGKSKGLLKTLTEGTWSDAFDGLSISLLLTSNPAIQYTVFDQLKQRALKNQENSVDRGSSPASLSAFMAFLLGAISKSVATVLTYPAIRCKVIIQAADNEEKSASKPQKKSGKTVCGVLWSIWQREGLPGYFKGLHAQILKTVLSSALLLMIKEKISATTWVLILAVRRSLLLPKGRVLATAFEGYGNREERKAAGGGGRAKYRRHKMMSGKYTTIDDQHVSGSVPAVSDPGQVTVKFTDTNLQAFPPSVPSGKISGGSWPLRHTDDTFSNPVSGSDQPQQGGWIRAFTVAAYKPYFDIDTSDVLERIKESLFPFRGTFNEKIASNPDLYGPFWICTTLIFVAASIGTFVTYIAHKLKNKEWSYDINLVTWAAGLFYGYVTIVPLCLYVILKYLSAPFSLVQLFCLYGYSIFVFIPALCMSIVPLEIFRWAIAGVAGFMSATFVALNLRAHIESAGERWFLIVAGIFVLQLALAVVLKLYLFTVSV	624

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele13g2279	624	ProSiteProfiles	Solute carrier (Solcar) repeat profile.	202	297	IPR018108	-
	Lele13g2279	624	PANTHER	PEROXISOMAL ADENINE NUCLEOTIDE TRANSPORTER 1	1	315	IPR045900	GO:0005347\|GO:0006635\|GO:0015217
	Lele13g2279	624	Pfam	Yip1 domain	455	614	IPR006977	GO:0016020
	Lele13g2279	624	FunFam	Peroxisomal adenine nucleotide carrier 1	3	298	-	-
	Lele13g2279	624	ProSiteProfiles	Solute carrier (Solcar) repeat profile.	5	94	IPR018108	-
	Lele13g2279	624	Pfam	Mitochondrial carrier protein	105	188	IPR018108	-
	Lele13g2279	624	Pfam	Mitochondrial carrier protein	202	295	IPR018108	-
	Lele13g2279	624	Pfam	Mitochondrial carrier protein	6	98	IPR018108	-
	Lele13g2279	624	Gene3D	Mitochondrial carrier domain	3	298	IPR023395	-
	Lele13g2279	624	ProSiteProfiles	Solute carrier (Solcar) repeat profile.	104	184	IPR018108	-
	Lele13g2279	624	SUPERFAMILY	Mitochondrial carrier	7	293	IPR023395	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele13g2279	Lele-ChrLele13	28867711	28873426	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele13g2279	23	331	Chloroplast and Mitochondria Gene Families	AT1G25380	26.852	1.84e-13	70.5

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele13g2267	13	28790602	28795113	Lele13g2279	13	28867711	28873426	CCT
	Lele14g2203	14	27134674	27137374	Lele13g2279	13	28867711	28873426	CCT
	Lele15g0145	15	870825	875340	Lele13g2279	13	28867711	28873426	CCT
	Lele13g2279	13	28867711	28873426	Lele13g2288	13	28902884	28906662	CCT
	Lele13g2279	13	28867711	28873426	Lele15g0125	15	755441	759169	CCT
	Lele13g2279	13	28867711	28873426	Lele13g2279	13	28867711	28873426	ECH
	Lele13g2279	13	28867711	28873426	Lele15g0133	15	791843	797432	hybridization
	Lele13g2279	13	28867711	28873426	Lele16g0141	16	817117	826529	hybridization