Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g2275 ATGCGCCATTGTAGCCACAAGCTTAGGCAGGCCAGAATGGCATGGTGCAGCTCGAGCGGCTTAAGCCCTACGACGACTCTTCCATTTCAAAATACGGTTACTCATCTCACTTGTCGCAGTTTTCGCCCGTTCCCTGTAAAGCGGCTGATTCTAGGTTCTTCTCGATTTAGAGTGAATTGCAGAGAGCCAGCTCATGACGATACACCTCTCTCCGTTGCTTCCGCTTACTCAGTCCTCGGAGTACACCCCGATTGCTCTGCTCTCGAATTGAAATCTGCTTTTCGAGCCAAGGTGAAGCAGTTCCATCCCGATGTGATCAAAGACGGAACAAATTCAGACACTATGATTCGCCGTGTAATCCAGGCATACGAGATGCTGTCCAGCTACAGCCGGTCAGAGATAATTGAAAGGGAATGCCTAGATCCATTTGACAAACCAGAATGTGAAGCTGTTGATATTTTTGTCAACGAGGTGCTTTGTGTTGGGAAAGCATGTTCAAATTCATGCGTGAACAGAGCTCCTCATGCTTTCACATACGTCTCTTCAACTGGAACAGCACGTGCATCTTCTCAAGGTCATGGCGAAGATTACCAAGTTCAACTCGCTGTTGGTCAATGCCCAAGAAGTTGCATTCATTATGTTACCCCATCACAGAGAATTATCTTAGAGGAGCTACTTGACAGCATACTGAATACACCCTTTTGTGATACGTCGACTGAGGCAGAATTGCTCTACTCACTTATAACGAAAGCCAGATATGAGAATAACAGATACCAAAAGCCGAAGAAGCAACCGAAAACTTCAAGCCAGCATGTGGATTGGCTTTAA 828 0.4614 MRHCSHKLRQARMAWCSSSGLSPTTTLPFQNTVTHLTCRSFRPFPVKRLILGSSRFRVNCREPAHDDTPLSVASAYSVLGVHPDCSALELKSAFRAKVKQFHPDVIKDGTNSDTMIRRVIQAYEMLSSYSRSEIIERECLDPFDKPECEAVDIFVNEVLCVGKACSNSCVNRAPHAFTYVSSTGTARASSQGHGEDYQVQLAVGQCPRSCIHYVTPSQRIILEELLDSILNTPFCDTSTEAELLYSLITKARYENNRYQKPKKQPKTSSQHVDWL 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g2275 275 Gene3D - 152 214 - -
Lele13g2275 275 PANTHER CHAPERONE PROTEIN DNAJ C76, CHLOROPLASTIC 52 274 - -
Lele13g2275 275 SMART dnaj_3 73 131 IPR001623 -
Lele13g2275 275 Pfam DnaJ domain 75 129 IPR001623 -
Lele13g2275 275 SUPERFAMILY Chaperone J-domain 72 136 IPR036869 -
Lele13g2275 275 CDD DnaJ 76 127 IPR001623 -
Lele13g2275 275 Gene3D DnaJ domain 64 147 IPR036869 -
Lele13g2275 275 ProSiteProfiles dnaJ domain profile. 74 144 IPR001623 -
Lele13g2275 275 PRINTS DnaJ domain signature 76 94 IPR001623 -
Lele13g2275 275 PRINTS DnaJ domain signature 111 131 IPR001623 -
Lele13g2275 275 PRINTS DnaJ domain signature 94 109 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g2275 Lele-ChrLele13 28850427 28852639 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g2275 13 28850427 28852639 Lele13g2283 13 28886369 28887045 CCT
Lele13g2275 13 28850427 28852639 Lele14g2217 14 27236368 27237092 CCT
Lele13g2275 13 28850427 28852639 Lele15g0131 15 781031 786089 CCT
Lele13g2275 13 28850427 28852639 Lele16g0139 16 805316 812038 CCT
Lele13g2275 13 28850427 28852639 Lele13g2275 13 28850427 28852639 ECH
Lele13g2275 13 28850427 28852639 Lele15g0136 15 806623 812851 hybridization