Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g2267 ATGTTTGATTCAGTAGCGGATACAGGACATGAAAGTAGTGGAGCGTCAGGATCCATTTTGATTCCACAGCGGTTCGTCTGGCCTTACGGGGGAAGAAGGGTGTTTCTAAGTGGTTCTTTTCTGAGGTGGTCTGAATATATACCTATGTCTCCTATGGAGGGATGTCCTACTGCGTTTCAAGTTGTTTGCAGCTTAATACCGGGATATCATCAGTACAAATTTAATGTGGATGGTAAGTGGCAGCATGATGAGCAACAGCCATTTGTAAGTGGGAGCTATGGAGTAGTGAATACTATTTTCTTGACAAGAGAGCCAGATGCTCTGCCTTCCATCTTTACTCCGGAGATACCTGGAAGATCCCACATGGATGTTGATAATGATGTCTTTGGGCTTGTGGAAGCTAATTTAAGGATGTCAGAGTCTGATCTGGAGGTCTCTCGCCACCGTATAGCTGTATTCTTGTCTACATATACTGCTTATGAGTTGCTTCCTGAGTCAGGCAAGGTCATTGCCTTTGATATCAACTTACCAGTTAAGCAAGCATTCCATGTTCTTTATGAACAGGGCATACCTATGGCTCCTTTATGGGATTTTCGCAAGAGCCAGTTTGTCGGAGTGCTTAGTGCTATGGATTTCATTCTAATATTGAAAGAGCTGGGTAATCATGGGTCAAATTTGACTGAAGAGCAACTTGAGACTCATACTATAGCAGCATGGAAAGAGGTGAAGTTACAACAACGCAGAACAATGGACAATCGGAGATCATATCCTCAGCATCTTGTTCACGCTGGGCCTCATGAGTGTCTGAAAGATGTGGCTTTGAAAATTTTGCAATACAATGTGGCATCGGTTCCTATTATTCACTCTGCTTCACAGGACGGTTCATTTCCGCAGCTGCTACATCTTGCTTCCTTATCAGAAATACTAAAATGTATTTGCAGGCACTTTAAGCATTCCTCTAGTTCCTTACCCATTCTTCATCTACCAATTGGTTCGATACCTTTGGGTACATGGGTGCCAAAAGTTGGGGAATCAAACAGACGGCCCCTTGCAATGCTTAGGCCAAATGCATCTCTTGGTGCCGCCCTGTCTCTGTTAATTCAAGCTGAAGTTAGTTCAATTCCAGTTGTGGATGATAATGACTCGTTGCTTGACATATATTCAAGAAGTGATATTACTGCATTGGCTAAAGATAAAGCTTATGCACGGATATCCCTTGATGAAATTAGCATCCATCAGGCACTGCTTTTGGGACAAGATGCAAATTCACCATATGGCTTTTACAATGGTCAGAGATGTCATATGTGTTTGAGATCTGATTCATTGCATAAAGTGATGGAGCGGTTAGCTAATCCTGGGGTTAGAAGACTTGTGATTGTGGAGCCAGGCAGCAAGCGCGTGGAGGGGATAATTTCATTGAGGGATGTGTTCAAATTCTTGTTAGGATAG 1449 0.4293 MFDSVADTGHESSGASGSILIPQRFVWPYGGRRVFLSGSFLRWSEYIPMSPMEGCPTAFQVVCSLIPGYHQYKFNVDGKWQHDEQQPFVSGSYGVVNTIFLTREPDALPSIFTPEIPGRSHMDVDNDVFGLVEANLRMSESDLEVSRHRIAVFLSTYTAYELLPESGKVIAFDINLPVKQAFHVLYEQGIPMAPLWDFRKSQFVGVLSAMDFILILKELGNHGSNLTEEQLETHTIAAWKEVKLQQRRTMDNRRSYPQHLVHAGPHECLKDVALKILQYNVASVPIIHSASQDGSFPQLLHLASLSEILKCICRHFKHSSSSLPILHLPIGSIPLGTWVPKVGESNRRPLAMLRPNASLGAALSLLIQAEVSSIPVVDDNDSLLDIYSRSDITALAKDKAYARISLDEISIHQALLLGQDANSPYGFYNGQRCHMCLRSDSLHKVMERLANPGVRRLVIVEPGSKRVEGIISLRDVFKFLLG 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g2267 482 ProSiteProfiles CBS domain profile. 345 403 IPR000644 -
Lele13g2267 482 CDD E_set_AMPKbeta_like_N 22 100 - -
Lele13g2267 482 SMART cbs_1 432 481 IPR000644 -
Lele13g2267 482 SMART cbs_1 168 217 IPR000644 -
Lele13g2267 482 SMART cbs_1 349 397 IPR000644 -
Lele13g2267 482 Gene3D Immunoglobulins 21 109 IPR013783 -
Lele13g2267 482 Gene3D - 329 482 IPR046342 -
Lele13g2267 482 Pfam Glycogen recognition site of AMP-activated protein kinase 21 103 IPR032640 -
Lele13g2267 482 Gene3D - 139 323 IPR046342 -
Lele13g2267 482 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 140 480 - -
Lele13g2267 482 SUPERFAMILY E set domains 21 101 IPR014756 -
Lele13g2267 482 SUPERFAMILY CBS-domain pair 341 481 IPR046342 -
Lele13g2267 482 Pfam CBS domain 434 481 IPR000644 -
Lele13g2267 482 Pfam CBS domain 347 393 IPR000644 -
Lele13g2267 482 FunFam Sucrose nonfermenting 4-like protein 18 103 - -
Lele13g2267 482 ProSiteProfiles CBS domain profile. 162 224 IPR000644 -
Lele13g2267 482 SUPERFAMILY CBS-domain pair 148 318 IPR046342 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g2267 Lele-ChrLele13 28790602 28795113 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g2267 30 89 Protein tyrosine phosphatase (PTP) family AT3G52180 36.066 6.47e-06 46.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g2258 13 28738731 28742075 Lele13g2267 13 28790602 28795113 CCT
Lele14g2194 14 27089954 27093750 Lele13g2267 13 28790602 28795113 CCT
Lele15g0152 15 928517 931836 Lele13g2267 13 28790602 28795113 CCT
Lele16g0158 16 945378 948800 Lele13g2267 13 28790602 28795113 CCT
Lele13g1945 13 27016869 27020791 Lele13g2267 13 28790602 28795113 CCT
Lele14g1873 14 25330446 25334095 Lele13g2267 13 28790602 28795113 CCT
Lele15g0466 15 2698206 2702092 Lele13g2267 13 28790602 28795113 CCT
Lele16g0487 16 2674958 2678614 Lele13g2267 13 28790602 28795113 CCT
Lele13g2267 13 28790602 28795113 Lele13g2279 13 28867711 28873426 CCT
Lele13g2267 13 28790602 28795113 Lele14g2214 14 27217885 27225146 CCT
Lele13g2267 13 28790602 28795113 Lele15g0133 15 791843 797432 CCT
Lele13g2267 13 28790602 28795113 Lele16g0141 16 817117 826529 CCT
Lele13g2267 13 28790602 28795113 Lele13g2267 13 28790602 28795113 ECH
Lele13g2267 13 28790602 28795113 Lele15g0145 15 870825 875340 hybridization