Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g2266 ATGTCAAACATCACGAGCTGTGACAGTGGGAGTTTCTCCGCAGAGAATACCAGAGAAGATGAAGCTATTAAAGAGCACCATCACCCTCAACTTACAGCTGCTCATCATCACCAGTTTCACACTTCAAGTTCTCTTACTTCAATTACCACTAACTGCAACGGTTCTAACGCCAATTCCCAACTGCCTCCTCCTCCTCCTCCGGTTAAGAAGAAACGAAGCCTCCCAGGAAACCCGGACCCAAGTGCTGAAGTGATTGCTTTGTCACCAAACACCCTGATGGCGAGAAACCGATTCGTATGTGAAATCTGCAGCAAAGGATTCCAAAGGGATCAGAATCTGCAATTGCACCGGCGAGGCCATAACCTGCCATGGAAGCTCAAGCAAAGGCCGACCACAGAAGTTCGAAAGCGCGTTTATGTTTGTCCAGAGCCGTCGTGCGTCCACCATAACCCAAGTCGAGCACTTGGTGACCCCACTGGCATCAAGAAGCACTTCTCAAGAAAACATGGCGAGAAGAAATGGAGGTGTGAAAAGTGCTCCAAGAGATACGCCGTCCAGTCCGACTGGAAAGCCCATTCTAAGATCTGTGGTACTAGGGAATACAAATGTGACTGTGGCACCGTCTTCTCCAGACGAGATAGCTTTATCACCCACAGAGCTTTCTGCGACGCGTTGGCCAAGGAGAATAATAAAGCCAACGATGAAGGACTACTAGGGCCAAAGTTATTTGGTCCAAATTCAAACTCATCACAAGTTCAACATCAAATCCCAAATCCCGTTTCTGCGTTGCCAGTCAACTCCAACTTCGTCAACCCACAAAACGGGACGCTTCATTATAACCATTCTGGTGAAATGAAACATCCGCTATCACATCTTCATCAGGAGCTCCTAGAATTTCCTGCAAAACCATTCAACTACATGACTGGAAGCGTATTCGCAAGAAGCCTCTTGTCCAACAGTTCCTGTTCATCACTGCAACTGGGTTCAAATAGTTCTCTGAGGATGTTGGAAGAAAACGAGCACCAAACAGGTGGATCGGCCCATATGTCAGCGACGGCATTGTTGCAGAAAGCAGCTCAAATGGGAGCAACTATGAGTAACAGTAGTAACAGCTCGTGCATGGCACCCTCATCAGTGGGGCATAATAATAATAATAACCACTACTACATGAACAGTGGACAAGCTGATATCTCATCATCTCAGTATTTCAGCCGAAATAATAATGGCTTTGGGATGAACAGTGTGGATATGTTCAATACTATAATGGATCAAAGCAAGACGTTATCGAAGATGATACAGCAGAACAGTGGAAGCAGTAATAATATGAATAACAATGGAGTTTTGCATGGTGCAATGAATAAAGCAAGTGGTGATGTTACGACTCTGGACTTGTTGGGGATCGGAGGAGGAGGAGGAGGAGGAGGTGGTGGTGGTACACATGATGCTTTTCTATGGCACCAAGCGGGCTGA 1470 0.4639 MSNITSCDSGSFSAENTREDEAIKEHHHPQLTAAHHHQFHTSSSLTSITTNCNGSNANSQLPPPPPPVKKKRSLPGNPDPSAEVIALSPNTLMARNRFVCEICSKGFQRDQNLQLHRRGHNLPWKLKQRPTTEVRKRVYVCPEPSCVHHNPSRALGDPTGIKKHFSRKHGEKKWRCEKCSKRYAVQSDWKAHSKICGTREYKCDCGTVFSRRDSFITHRAFCDALAKENNKANDEGLLGPKLFGPNSNSSQVQHQIPNPVSALPVNSNFVNPQNGTLHYNHSGEMKHPLSHLHQELLEFPAKPFNYMTGSVFARSLLSNSSCSSLQLGSNSSLRMLEENEHQTGGSAHMSATALLQKAAQMGATMSNSSNSSCMAPSSVGHNNNNNHYYMNSGQADISSSQYFSRNNNGFGMNSVDMFNTIMDQSKTLSKMIQQNSGSSNNMNNNGVLHGAMNKASGDVTTLDLLGIGGGGGGGGGGGTHDAFLWHQAG 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g2266 489 MobiDBLite consensus disorder prediction 35 58 - -
Lele13g2266 489 ProSitePatterns Zinc finger C2H2 type domain signature. 100 120 IPR013087 -
Lele13g2266 489 FunFam protein indeterminate-domain 5, chloroplastic-like 152 231 - -
Lele13g2266 489 FunFam protein indeterminate-domain 12-like 77 145 - -
Lele13g2266 489 SUPERFAMILY beta-beta-alpha zinc fingers 97 194 IPR036236 -
Lele13g2266 489 Pfam Zinc finger, C2H2 type 98 120 IPR013087 -
Lele13g2266 489 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 43 467 IPR031140 -
Lele13g2266 489 Gene3D Classic Zinc Finger 137 222 - -
Lele13g2266 489 SMART c2h2final6 98 120 IPR013087 -
Lele13g2266 489 SMART c2h2final6 139 169 IPR013087 -
Lele13g2266 489 SMART c2h2final6 174 194 IPR013087 -
Lele13g2266 489 ProSiteProfiles Zinc finger C2H2 type domain profile. 98 120 IPR013087 -
Lele13g2266 489 MobiDBLite consensus disorder prediction 59 73 - -
Lele13g2266 489 Gene3D Classic Zinc Finger 98 136 - -
Lele13g2266 489 MobiDBLite consensus disorder prediction 32 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g2266 Lele-ChrLele13 28776579 28779048 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g2266 43 369 IDZ Gene Family AT3G50700 51.695 5.24e-107 324
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele13g2266 zf-C2H2 0.0084 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g1440 05 9207193 9210527 Lele13g2266 13 28776579 28779048 CCT
Lele13g2256 13 28719895 28727446 Lele13g2266 13 28776579 28779048 CCT
Lele14g2192 14 27072057 27077291 Lele13g2266 13 28776579 28779048 CCT
Lele15g0154 15 944941 951906 Lele13g2266 13 28776579 28779048 CCT
Lele16g0163 16 968398 972103 Lele13g2266 13 28776579 28779048 CCT
Lele13g2266 13 28776579 28779048 Lele13g2274 13 28841051 28842515 CCT
Lele13g2266 13 28776579 28779048 Lele14g2209 14 27185234 27186701 CCT
Lele13g2266 13 28776579 28779048 Lele15g0137 15 821579 823031 CCT
Lele13g2266 13 28776579 28779048 Lele16g0144 16 841010 859880 CCT
Lele13g2266 13 28776579 28779048 Lele05g1435 05 9127958 9131008 CCT
Lele13g2266 13 28776579 28779048 Lele06g1296 06 8263028 8266228 CCT
Lele13g2266 13 28776579 28779048 Lele07g1499 07 9148420 9151697 CCT
Lele13g2266 13 28776579 28779048 Lele08g1293 08 8227113 8230326 CCT
Lele13g2266 13 28776579 28779048 Lele14g2202 14 27120825 27123350 ECH
Lele13g2266 13 28776579 28779048 Lele13g2266 13 28776579 28779048 ECH
Lele13g2266 13 28776579 28779048 Lele15g0146 15 894153 896957 hybridization
Lele13g2266 13 28776579 28779048 Lele16g0151 16 915661 918188 hybridization