Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g2264 ATGCCAGATAAAACTGTCTGTGAAAAGCACTATATACAGGCAAAGAAGAGGGCAGCTAATTCTGCCATGAGAGCTAGTCTGAAGAAGGCTAAGAGAAAGTCATTAGGCGAGAGTGACATTTATCTAGAGAGCAAGAGTGAGGATTTTGACATGCCACTCGCAATCATGAAAGTTGAACAGCATTCGGCCTCTGGAAAGAACAAGGCATCAAAAAATCAGTTCAGATATACAGCAGAGACACCAACCACAAGGACCACCTCTGTGCGCAATGCTCCAAAGCCAAATGACGATTCACCAGATGATATTCCCCAGTATGAAGAAAATTGGATGTCTTACGAGTCACCACCTAGTTCTCGAATGGACTTATCCAGGAAAAGATCTCAAACAAATTTAGATGCCAATGCTGCTACAGAATACTCAGATGGAAGTACAGATTCCTCTGATGATATTGGTGGGCAAACTTGCCATCAATGTCGAAAGAATGATAGAGACAGAGTTATTTGTTGTTCAAGATGTGATAGGAGAGGATACTGTGAGAGCTGTATATTAACATGGTACTCAGACATGTCATTGGATGAAATTCAGAGGACTTGTCCTGCCTGCCGTGGCACATGTAATTGTAAAGTTTGCTTACGTGTTGAGAATTCAATGAAGGTCCGGATTCGGGAGATACCTGTTCTAGACAAGTTACAGCATCTCCACGTGCTGCTGTCATCAGTACTTCCTGTGGTTAAGCAGATCCATCATGAGCAGTGTTATGAAGTTGAACTTGAAAAGAAGTTGCGTGGGATTGAAATAGCTCTTCCCAGGACAAAACTGAATGCAGATGAGCAAATGTGCTGTAATTTCTGTCGGATACCAATTACTGATTATCACCGGCACTGCCCAAATTGTACATATGATTTATGCCTTAATTGCTGTCGAGATCTTCGAGAAGCAAATGTAAATCCAGAAAAAGTAACCCCAACAGATGAAGCAAAACTTTCAAATAAAAATTTGCCATATAAGTTGCCTGATTGGAGATCCAACGGTGACGGTAGCATTCCATGCCCCCCAAAGAAATATGGTGGCTGTGGTTATTCCCCATTGAATTTAAGCCGCATCTTCAAGATGAACTGGGTTGCAAAATTGGTGAAAAATGTGGAGGAGATGGTTAGTGGCTGCCAGATTAGTGAAGTTGGAGGATCAGAAACCAAGTTGAATGATCTCAAACTTTGCCAATATTCTCACAGGGAGGCCAGCTATGATAATTATCTGTACTGTCCAACATCTGAAGATCTCAAAACTGATGGGATAGGAAATTTTAGAAAGCACTGGAAAATTGGTGGACCCATTATTGTCAAGCAAGTATTTGATAGGTCATCAAGCTGGGATCCCATGGCCATATGGAGAGGGGTTCAAGAGACAGCAGATGAGAAAATGAAAGAAGTTGAGAACAGAGTTGTTAAGGCCCTGGATTGTTTAACCTGGACAGAGATAGATATCAAACTTAATGAATTCATGAAAGGATACTTTGAGGGGCGTACCCGCGAAAATGGCTGGCCACAATTATTGAAGTTGAAGGATTGGCCTTCACCTAGTGCATCTGAAGAATTTTTATTGCATCAAAGACCTGAATTTATCAGCAAACTGCCTCTGCTTGAATATATTCCCTCGAAATGGGGCCTTCTTAATGTTGCAGCTAAATTGCCTCATTACTCCTTGCAGAATGATGTAGGACCCAAGATTTATATATCATATGGGGTCAGTGAGGAACATGGTAGTGGTGACTCAGTGACCAATCTCCACTTTAATATGCGTGACATGGTCTATCTTTTGGTCCATACGAGTGAAGTGAAGCTCAAGAACTTGCAGGGAACAGAAAGTGAAAAGATACAGAAATCATCTGATGCAAGTGAATTGCCTGTGGATCCACAAATGTGTTCAGTGGGGAGTCCAGCTGATTCATCACTTGGCACAGAAAGAATCGGACTGGATTTGGATTCAAATAAGAAAACGTCAATTACCAAGGAAGGGTTTGAAAATTATTCTAGTGCTAAAGGGGATATGAACAATTCTGAACTTCCAGTCAGGGATGGAGATGTTGTGGAGAGAACAGATCCTGGAGTTCTTTGGGATGTCTTTCGTCGGCAGGATGTTCCAAAGCTGACTGAATTTCTAAAAACGCATTGGAAAGAATTTGCACAACCAGATGATATGGTTACAAGGCCTCTTTATGATGGAGTTATTTTTCTTAACGGACACCATAAAAGGGAGTTGAAGGAAGAATTTGGAGTGGAGCCATGGTCATTTGAACAGTGTGTAGGGGAAGCTGTATTTGTTCCTGCAGGGTGCCCTTTCCAAGCAAGGAATGTTCAGTCCACTGTTCAGCTGGGCCTTGATTTCTTATCACCGGAAAGCCTGGGGGAGTCAGTGAGATTGGCTGAGGATGTCCGCTGTCTGCCAAATGAACATGAAGCCAAGCATCAAGTGTTGGAGGTTGGGAAGATATCTCTTTATGCAGCGAGTTCAGCCATCAAAGAAGTTCAGAAACTCGTTCTTGACCCAAAACTTGGTGCGGAGATCGGATTTGGGGATCCCAATCTGACTGCAATCGTTGCTGAGAACTACGAGAAGATGGTTAAGCGAAGACAGATTTCTTGTGCTTGA 2649 0.4243 MPDKTVCEKHYIQAKKRAANSAMRASLKKAKRKSLGESDIYLESKSEDFDMPLAIMKVEQHSASGKNKASKNQFRYTAETPTTRTTSVRNAPKPNDDSPDDIPQYEENWMSYESPPSSRMDLSRKRSQTNLDANAATEYSDGSTDSSDDIGGQTCHQCRKNDRDRVICCSRCDRRGYCESCILTWYSDMSLDEIQRTCPACRGTCNCKVCLRVENSMKVRIREIPVLDKLQHLHVLLSSVLPVVKQIHHEQCYEVELEKKLRGIEIALPRTKLNADEQMCCNFCRIPITDYHRHCPNCTYDLCLNCCRDLREANVNPEKVTPTDEAKLSNKNLPYKLPDWRSNGDGSIPCPPKKYGGCGYSPLNLSRIFKMNWVAKLVKNVEEMVSGCQISEVGGSETKLNDLKLCQYSHREASYDNYLYCPTSEDLKTDGIGNFRKHWKIGGPIIVKQVFDRSSSWDPMAIWRGVQETADEKMKEVENRVVKALDCLTWTEIDIKLNEFMKGYFEGRTRENGWPQLLKLKDWPSPSASEEFLLHQRPEFISKLPLLEYIPSKWGLLNVAAKLPHYSLQNDVGPKIYISYGVSEEHGSGDSVTNLHFNMRDMVYLLVHTSEVKLKNLQGTESEKIQKSSDASELPVDPQMCSVGSPADSSLGTERIGLDLDSNKKTSITKEGFENYSSAKGDMNNSELPVRDGDVVERTDPGVLWDVFRRQDVPKLTEFLKTHWKEFAQPDDMVTRPLYDGVIFLNGHHKRELKEEFGVEPWSFEQCVGEAVFVPAGCPFQARNVQSTVQLGLDFLSPESLGESVRLAEDVRCLPNEHEAKHQVLEVGKISLYAASSAIKEVQKLVLDPKLGAEIGFGDPNLTAIVAENYEKMVKRRQISCA 882
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g2264 882 Gene3D Cupin 417 821 - -
Lele13g2264 882 SMART cupin_9 533 812 IPR003347 -
Lele13g2264 882 SUPERFAMILY Clavaminate synthase-like 436 821 - -
Lele13g2264 882 MobiDBLite consensus disorder prediction 60 128 - -
Lele13g2264 882 ProSiteProfiles JmjC domain profile. 526 812 IPR003347 -
Lele13g2264 882 MobiDBLite consensus disorder prediction 110 128 - -
Lele13g2264 882 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 150 216 IPR018866 -
Lele13g2264 882 Pfam JmjC domain, hydroxylase 703 791 IPR003347 -
Lele13g2264 882 ProSiteProfiles Zinc finger RING-type profile. 155 202 IPR001841 -
Lele13g2264 882 MobiDBLite consensus disorder prediction 63 93 - -
Lele13g2264 882 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 40 846 IPR045109 GO:0032454|GO:0033169
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g2264 Lele-ChrLele13 28768734 28774376 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Lele13g2264 JmjC 1.8e-06 CL0029
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g2264 13 28768734 28774376 Lele15g0147 15 900062 905804 hybridization
Lele13g2264 13 28768734 28774376 Lele16g0153 16 920462 926135 hybridization