Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g2259 ATGGATGGTAAGGACGTATCTTCCGATCAAGTCATTGCAGAAATGCTAGAAATGGGGTTTCAATATGCCAATATTATGGAAGCTTTGAAAGCAGTAGGTCCATCTACTCATAGTGCTGTGGAGTTTATCCTGAATAATGCTGGTAGAAATAGCGGTAGAGCATCTCCTGCTAATATTAATAATTCCAAATTTCGTAAGGGCAACGAAGAGGGTCTCAGAAAAAGGGACTTGGCATCATCCCATTCCGTAAGTTATGTTCGACAGTCTAGCATCCTGGACCATGTCCAAGCCACTAATAAATCCATAAAAAGAAAGACAGATATTGTACTTGGTGCACCCTTTAGTAGGTTGGAAGCTCCTTCAGGCAATATGGAAGAGCTCAAGGAGCCTTTCACTGACATGGATGTTTATTCCAATATATTGTCAGAAAATTGTAAGGTTGATTCCCTGGATGAGTTGGATAGTTCATCAGATTGGGAGCAGAAAGCTAGCAATCTCTTGCAAGAGCATTTTGGCTTTTCGAGCTTAAAGAGTTTTCAAAAGGAAGCCCTGACTGCTTGGGTAACTCATAAAGACTGTCTTGTCCTGGCTGCAACGGGATCTGGAAAGTCTTTGTGCTTTCAGATTCCTGCATTGCTATCTGGGAAAGTGGTGGTTGTGATTTCACCCTTAATAAGCCTGATGCATGATCAATGCTTAAAGCTAGCAAGACATGGGATCAGCTCTTGCTTTCTTGGGTCTGGGCAACCTGACAATACTGTTGAACGGAAAGCAATGAGAGGCATGTATAGTATAGTGTATGTTTGCCCAGAGACAGTTCTAAGATTGATTGAACCACTACAGAAGCTTGCAAAAAGTCGCGGTATTGCTTTATTCGCAATCGATGAAGTGCATTGTGTTTCTAAATGGGGCCATGATTTCCGGCCAGACTACAGACGACTGTCTGCATTAAGGGAAAATTTCAGTACTAGCAAGCTAGAATTCCTGAAATTTGATATACCTCTGATGGCTTTGACTGCTACAGCTACCAACCTGGTTCGAAAGGATGTTTTAAATTCACTGCATATGTCAAAAGGGACAAAGATTGTTCTCACTTCCTTTTTCCGGCCCAATTTACGTTTCATTGTAAGGCATAGTAAGACATCTCCATCTTCTTACGGGAAAGATTTTAATGAGCTAATTGAACTATATGGTAAAAAGCAAAAGTCAGATGACAAGAAAAAAAAAATTATATCAGAGGAATCGCCTGATGTCCTCATTAGCTCTGATGCCAGTAGAATCTGTGAGGTTGACAGTCTTCCTCCTTATTATTTGGATGGTGACCAAGATGATTACAGTGAAGGAGGTATTAGCGTATTGCATTCAAGAAGCACTAGTGGGGCTATAAATGGAAAAGAATTGTCAGTTGAGTACCTGGAAAACGACATTGACGTCTTTCAAAGTGTGGATGACTGGGATGTTGCCTGTGGCGAATTCTGTGGACAACCTTCTCAAAAGGAATGGAAGTTATCTGAGATTGTTGATCCACCCAAGAAATCAGAAGAGAGACTTAGACGTCTTAAAGATCCTTTAGAGCGAGGACCAACTATCATATATGTACCCACCAGAAAAGAAACACTGAACATTGCAAAGTATCTATGTGAATTTGGTGTGAAGGCTGCTGCTTATAATGCATCGCTGCCCAAAACACATCTAAGAAGGGTACACAAGGAGTTTCATGAAAACACATTAGAGGTTGTTGTTGCAACAGTGGCTTTTGGAATGGGGATTGACAAATTAAATGTCAGAAGAATCATCCATTATGGTTGGCCACAGAGTTTAGAAGCCTATTACCAAGAAGCTGGCCGTGCCGGACGAGATGGTAAATTAGCAGATTGCATTCTTTATGCAAACCTATCAAGGGAACCGTCACTTTTGCCCAGTCGTAGAAGTGAAGAACAGTTAACACATGCCTATGTCATGTTGTCTGATTGTTTCAGATATGGAATGAATACTTCATCTTGTAGAGCAGAGGCTCTCGTGAAGTACTTTGGAGAGGACTTCCATAATCAAAAGTGTCTCATATGTGATGTGTGTGTTGATGGACCACCTCAAATGCAAAATCTGAGAGAGGAGGCATGTACTTTACTACAAGCTGTAGCTGAACATAATGGTCAAAGCTATGATGTAGATGGCTTATATGATGAAGATGTACATTTTGACCCTGAAGAAAGAAGAATCAAGGGGAGGCTTAGTCTGAATATGGTTGTTAGGAAGATAAGGGAGCAGTCTCAAAATTTTTTTACCACCGATATGTTATGGTGGAGAGGTCTTGCTCGAGTTATGGAACAGAAAGGATACATCAGGGAGGGAGATGCCAAGAGCCATGTGCAGATTAAGTACCCAGAACCAACAGAAGTGGGATTGAAATTCGTCAAGTCAAATAGTGAGGAAGCTTTCTATGTTTACCCCGAGGCAGATATGCTGCTTGCGGCCAAAAGCAGCCATAGCAAACCATTCTCCTCATTCTCGGATTGGGGAAAAGGCTGGGCTGATCCGGAGATTCGTCGCGAGCGGCTCCAAAGAATGCAACGCAATAGGAAGTCACCGAAGCTGCCGAGTCCTAGAAAGTCACGTAAGAGAAAAGCTATTAGAATGAAGCCTGATCTGAGGACTTGTCGTGGGAGACTAGCTGCAAAACTCTCTAAACGTACGTGA 2697 0.4197 MDGKDVSSDQVIAEMLEMGFQYANIMEALKAVGPSTHSAVEFILNNAGRNSGRASPANINNSKFRKGNEEGLRKRDLASSHSVSYVRQSSILDHVQATNKSIKRKTDIVLGAPFSRLEAPSGNMEELKEPFTDMDVYSNILSENCKVDSLDELDSSSDWEQKASNLLQEHFGFSSLKSFQKEALTAWVTHKDCLVLAATGSGKSLCFQIPALLSGKVVVVISPLISLMHDQCLKLARHGISSCFLGSGQPDNTVERKAMRGMYSIVYVCPETVLRLIEPLQKLAKSRGIALFAIDEVHCVSKWGHDFRPDYRRLSALRENFSTSKLEFLKFDIPLMALTATATNLVRKDVLNSLHMSKGTKIVLTSFFRPNLRFIVRHSKTSPSSYGKDFNELIELYGKKQKSDDKKKKIISEESPDVLISSDASRICEVDSLPPYYLDGDQDDYSEGGISVLHSRSTSGAINGKELSVEYLENDIDVFQSVDDWDVACGEFCGQPSQKEWKLSEIVDPPKKSEERLRRLKDPLERGPTIIYVPTRKETLNIAKYLCEFGVKAAAYNASLPKTHLRRVHKEFHENTLEVVVATVAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGKLADCILYANLSREPSLLPSRRSEEQLTHAYVMLSDCFRYGMNTSSCRAEALVKYFGEDFHNQKCLICDVCVDGPPQMQNLREEACTLLQAVAEHNGQSYDVDGLYDEDVHFDPEERRIKGRLSLNMVVRKIREQSQNFFTTDMLWWRGLARVMEQKGYIREGDAKSHVQIKYPEPTEVGLKFVKSNSEEAFYVYPEADMLLAAKSSHSKPFSSFSDWGKGWADPEIRRERLQRMQRNRKSPKLPSPRKSRKRKAIRMKPDLRTCRGRLAAKLSKRT 898
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g2259 898 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 166 395 IPR004589 GO:0004386|GO:0006310
Lele13g2259 898 MobiDBLite consensus disorder prediction 855 880 - -
Lele13g2259 898 Gene3D - 503 630 IPR027417 -
Lele13g2259 898 FunFam ATP-dependent DNA helicase 503 630 - -
Lele13g2259 898 Pfam DEAD/DEAH box helicase 179 344 IPR011545 GO:0003676|GO:0005524
Lele13g2259 898 Gene3D - 634 814 IPR036388 -
Lele13g2259 898 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 516 667 IPR001650 -
Lele13g2259 898 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 184 360 IPR014001 -
Lele13g2259 898 Gene3D - 5 47 - -
Lele13g2259 898 MobiDBLite consensus disorder prediction 51 76 - -
Lele13g2259 898 Pfam RecQ zinc-binding 643 692 IPR032284 -
Lele13g2259 898 SMART ultradead3 172 377 IPR014001 -
Lele13g2259 898 MobiDBLite consensus disorder prediction 850 898 - -
Lele13g2259 898 CDD DEXHc_RecQ 167 367 - -
Lele13g2259 898 Gene3D - 137 368 IPR027417 -
Lele13g2259 898 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 5 46 IPR015940 -
Lele13g2259 898 PANTHER DNA HELICASE RECQ FAMILY MEMBER 153 783 - -
Lele13g2259 898 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 215 632 IPR027417 -
Lele13g2259 898 MobiDBLite consensus disorder prediction 51 65 - -
Lele13g2259 898 SUPERFAMILY UBA-like 8 47 IPR009060 GO:0005515
Lele13g2259 898 SMART helicmild6 540 621 IPR001650 -
Lele13g2259 898 FunFam ATP-dependent DNA helicase 146 368 - -
Lele13g2259 898 FunFam ATP-dependent DNA helicase 632 810 - -
Lele13g2259 898 Pfam Helicase conserved C-terminal domain 520 620 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g2259 Lele-ChrLele13 28743415 28749568 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g2259 498 621 Eukaryotic Initiation Factors Gene Family AT5G11170 29.032 7.21e-08 53.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g2259 13 28743415 28749568 Lele15g0151 15 921561 927798 hybridization
Lele13g2259 13 28743415 28749568 Lele16g0157 16 942974 944943 hybridization