Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g2251 ATGACAAGCCACACTAGTGCCTCCAATCATTCTAACTTGCTTCTAGCTCCAAAACAACTTTTACTTAATATTGGTCTTCTGTACTTGGAACAATCCAGACAACATTGTCGAATCGTGGAAGGTTTGGACAGCTCAAATTTGATCCTCCACTGTAAAGATCGTGCACGTGTAACCACGTCATTGGAACCTTGGCAAACGTCTCAATTTATAACTGGAAATAAGTTTTCCTTTCTCGCCCTTCGGCTTCCAGAAGCGCCTGAACAGAAAACCGACTCCTCCCAAGCTAACCAGCTTCCGGATTCTCTCGTATTTCGCCTCTCAAGCACCAGAACCTATCTGATCAATCAATCCTTACACAGTCCTGCTCTGCTTCTTGAATTTTCTGCTCAGGTATGCGCTCCCTTGCTCACCATCACGCTCCAGTTCTTGTTCTGTCTTCTTTTATCCGGAAAAATGAGTAGGCTTTCAAGTCGTACTATTTATGTTGGCAATCTTCCTGGTGATGTTCGTTTGAGAGAAGTTGAGGATCTTTTCTACAAGTATGGTCCTATTGTTGACATTGATTTGAAAATCCCTCCAAGACCTCCTGGTTATGCTTTTGTAAAGTTTGAGGATCGTCGTGATGCTGAAGATGCTATTCGCTATCGAGATGGTTCTAATTTTGATGGTTACCGATTGCGAGTTGAATTTGCGCATGGTGGGCGGGGACATTCATCATCAGTTGACCGTTACAGTAGTTATAGCAGTGGTGGTGGTAGCCGTGGAGTTTCCAGGCGTTCGGACTACCGTGTTCTGGTCACTGGATTACCCCCGTCAGCTTCATGGCAAGACTTGAAGGATCACATGCGTAAAGCTGGCGATGTATGTTTCTCTGAAGTCTTTCGGGAGCGTGGTGGCATGACTGGTGTCGTGGATTATACCAATTATGATGATATGAAGTATGCTATCAGGAAACTTGATGACTCAGAATTCCGGAATGCATTTTCGCGTGCATACATACGGGTGAGGGAGTATGATCGTCGGAGTTATTCTAGGAGTCCCAGCCGTGATTCAAGGAGGAGCTATTCTAGAAGCTATAGCCGCAGTCCTTATAGGTCACGAAGTCGAAGCCGCAGTTGGAGTCGGGATCACAGTTATAGAGGCAGGAGCAGAAGTTTGTCACCAAAGGTAAAACATTCGAGGCGTTCAATATCTCTTTCAAGATCCCGCTCAAGATCCAGATCTCCAAATTCATCGCCTTCACCTTATAAAAGTTCCAGTCCTCGCCGTAGAAGCTTGTCGCGATCCCGTTCACCTTCGGTGAGGTCTGACCGCAGCAGATCTGTCGACTCTGGATATCGTTATTGA 1347 0.4581 MTSHTSASNHSNLLLAPKQLLLNIGLLYLEQSRQHCRIVEGLDSSNLILHCKDRARVTTSLEPWQTSQFITGNKFSFLALRLPEAPEQKTDSSQANQLPDSLVFRLSSTRTYLINQSLHSPALLLEFSAQVCAPLLTITLQFLFCLLLSGKMSRLSSRTIYVGNLPGDVRLREVEDLFYKYGPIVDIDLKIPPRPPGYAFVKFEDRRDAEDAIRYRDGSNFDGYRLRVEFAHGGRGHSSSVDRYSSYSSGGGSRGVSRRSDYRVLVTGLPPSASWQDLKDHMRKAGDVCFSEVFRERGGMTGVVDYTNYDDMKYAIRKLDDSEFRNAFSRAYIRVREYDRRSYSRSPSRDSRRSYSRSYSRSPYRSRSRSRSWSRDHSYRGRSRSLSPKVKHSRRSISLSRSRSRSRSPNSSPSPYKSSSPRRRSLSRSRSPSVRSDRSRSVDSGYRY 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g2251 448 CDD RRM2_SF2_plant_like 262 337 - -
Lele13g2251 448 MobiDBLite consensus disorder prediction 339 356 - -
Lele13g2251 448 SMART rrm1_1 159 229 IPR000504 GO:0003723
Lele13g2251 448 SMART rrm1_1 263 332 IPR000504 GO:0003723
Lele13g2251 448 Gene3D - 262 339 IPR012677 -
Lele13g2251 448 MobiDBLite consensus disorder prediction 430 448 - -
Lele13g2251 448 FunFam ASF/SF2-like pre-mRNA splicing factor SRP31 152 261 - -
Lele13g2251 448 MobiDBLite consensus disorder prediction 239 255 - -
Lele13g2251 448 MobiDBLite consensus disorder prediction 384 401 - -
Lele13g2251 448 SUPERFAMILY RNA-binding domain, RBD 157 329 IPR035979 GO:0003676
Lele13g2251 448 MobiDBLite consensus disorder prediction 234 257 - -
Lele13g2251 448 Gene3D - 150 261 IPR012677 -
Lele13g2251 448 MobiDBLite consensus disorder prediction 339 448 - -
Lele13g2251 448 MobiDBLite consensus disorder prediction 402 427 - -
Lele13g2251 448 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 158 233 IPR000504 GO:0003723
Lele13g2251 448 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 262 340 IPR000504 GO:0003723
Lele13g2251 448 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 149 431 - -
Lele13g2251 448 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 264 326 IPR000504 GO:0003723
Lele13g2251 448 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 160 227 IPR000504 GO:0003723
Lele13g2251 448 CDD RRM1_SF2_plant_like 159 229 - -
Lele13g2251 448 MobiDBLite consensus disorder prediction 369 383 - -
Lele13g2251 448 FunFam serine/arginine-rich splicing factor SR34A-like 262 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g2251 Lele-ChrLele13 28681214 28686323 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g2251 13 28681214 28686323 Lele15g0161 15 987041 990085 hybridization
Lele13g2251 13 28681214 28686323 Lele16g0170 16 1011486 1016525 hybridization