Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g2247 ATGTCCGCGGATGGACAGAACAAAAGGAGAATAGCCATCATTGGCGTCTCTGGGGTGTTACTGGTGGGCATGGTGGTGGCCGTGACGGTCGGCATGACGTGGAAGCAATCAGATTCCGATGAGGAAGACAATAATTCCGATAAGATGTCTAACAAAGTGAAAGCAGTGCAGAGCCTGTGCGCCCCCACCGACTACAAGACAGAATGCGAGGAGAGCCTGTCGGAGGACTCCACCAACACCACCGATCCCAAAGAACTCATCATGATGGCCTTCAACGTCACGATCAAGAAAATCGAGAAGGGCCTTCGTGAATCAGACACCTTGCATGAGGTGGAGAAGGATCCCCGAGCCAAGGAAGCCCTCCAGACCTGCAAGGACCTCATGGAACTTTCCATTGGTGAGTTCAGGAAATCCCTCGGAACCTTCGAGACCTTTGATTTCTACAACCTCGATAGGATTCTCATGAACCTCAAAGTTTGGCTCAGTGGAGCCATCACTTACCAGGAAACCTGCATTGAAGGCTTCGAGGAAGCCAAGAGCGACGCTGGTCAGAAGATGAAGCAGGCACTCACGGCCGCCACACACATGAGCAGCAACGGCCTCGCCATGATCAACGACATGGCCGAAGCTTTATCTAGTCTGCACATCACAAAACAAGGAAGGCGACTGCTTAATGAACAAGAGGATGGAGGCGAAGATCATCATCACGACGAGGCAGGTGCGAACGAAGATGGCGCCAGACCCGAAGGCGACTTCGATTTCCCCTTGTGGATCGATGAAAATCCTGCTGCTCGGAGACTGCTGACGAGCGAGCATAAAAGCAAACTGAAGCCGGATGTGGTGGTGGCGAAAGACGGGAGTGGGAAATACAAGAAAATCAAAGAGGCGCTAAAGCATGTGCCGAAGAACAACAAAAAGCCGTTTGTGATCTACATCAAGGAAGGGGAGTACAAAGAGTACGTGGAAGTGGAGAAGCACATGACGTACGTTGTGTTCGTGGGGGATGGCGGCAACAAGACCCGCATCACCGGCAACAAGAACTTCGCAGGCGGGATCGGCACCTATAAGACCTGCACGGTGGCGGTAGCAGGGGACCACTTCATCGCCATCAACATGGGGATCGAAAACTCAGCCGGTCCCGACGGACATCAGGCCGTGGCATTGAGGGTTCAATCCGACTTCTCCATATTCTACAGATGCCAATTGGATGGGTACCAGGACACGCTGTACGCGCACACCATGCGTCAATTCTACAGGGACTGCGTCATCACCGGCACCATAGACTTCATCTTCGGGGACGGCGCCGTCGTGATGCAGAACTGCACGTTCGTGGTGAGGAAGCCGAACGAGAACCAGCAGTGCATAGTGACGGCGCAAGGGAGGAAGGAGAGGCACCAACCGTCGGCGCTAGTGATCCAAGGAGGGTCCATAGTGTCGGACCCAAAGTTCTATAAAGTGAGGTTCGAGAACAAGGCGTACTTAGCTCGGCCATGGAAGAACTTCTCGAGGTTGATCATATTGGAAACCTTCATAGATGACCTGATACAGCCAGAAGGGTTTCTCAAGTGGGACGCTAACTCCACATCGTACAAGACATGCTGGTACGGAGAGTTCAACAACACAGGGCCAGGCGCCGACATGAGTCATCGCGTCAAGTGGAATGGGATCAAGAATCTGACGGCACAGCATGCTCTGGATTTCACACCCTTGAGGTACTTCAAGACAGATTACTGGATTAGGGAAACTAGGATCCCTTACAATCCCGGCGCCATGTCCTCCCCTCCATTTACTGCTAAAAAGGTCTCCTCTCAGTGA 1815 0.5273 MSADGQNKRRIAIIGVSGVLLVGMVVAVTVGMTWKQSDSDEEDNNSDKMSNKVKAVQSLCAPTDYKTECEESLSEDSTNTTDPKELIMMAFNVTIKKIEKGLRESDTLHEVEKDPRAKEALQTCKDLMELSIGEFRKSLGTFETFDFYNLDRILMNLKVWLSGAITYQETCIEGFEEAKSDAGQKMKQALTAATHMSSNGLAMINDMAEALSSLHITKQGRRLLNEQEDGGEDHHHDEAGANEDGARPEGDFDFPLWIDENPAARRLLTSEHKSKLKPDVVVAKDGSGKYKKIKEALKHVPKNNKKPFVIYIKEGEYKEYVEVEKHMTYVVFVGDGGNKTRITGNKNFAGGIGTYKTCTVAVAGDHFIAINMGIENSAGPDGHQAVALRVQSDFSIFYRCQLDGYQDTLYAHTMRQFYRDCVITGTIDFIFGDGAVVMQNCTFVVRKPNENQQCIVTAQGRKERHQPSALVIQGGSIVSDPKFYKVRFENKAYLARPWKNFSRLIILETFIDDLIQPEGFLKWDANSTSYKTCWYGEFNNTGPGADMSHRVKWNGIKNLTAQHALDFTPLRYFKTDYWIRETRIPYNPGAMSSPPFTAKKVSSQ 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g2247 604 ProSitePatterns Pectinesterase signature 2. 423 432 IPR033131 -
Lele13g2247 604 MobiDBLite consensus disorder prediction 227 252 - -
Lele13g2247 604 SMART PMEI_2 51 203 IPR006501 GO:0004857
Lele13g2247 604 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 55 207 IPR035513 -
Lele13g2247 604 CDD PMEI-like_3 58 208 - -
Lele13g2247 604 FunFam Pectinesterase 52 208 - -
Lele13g2247 604 Gene3D - 273 590 IPR012334 -
Lele13g2247 604 Pfam Plant invertase/pectin methylesterase inhibitor 55 203 IPR006501 GO:0004857
Lele13g2247 604 TIGRFAM PME_inhib: pectinesterase inhibitor domain 51 206 IPR006501 GO:0004857
Lele13g2247 604 Pfam Pectinesterase 279 574 IPR000070 GO:0030599|GO:0042545
Lele13g2247 604 Gene3D Invertase/pectin methylesterase inhibitor family protein 51 208 IPR035513 -
Lele13g2247 604 SUPERFAMILY Pectin lyase-like 277 587 IPR011050 -
Lele13g2247 604 FunFam Pectinesterase 273 590 - -
Lele13g2247 604 PANTHER PECTINESTERASE 20 580 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g2247 Lele-ChrLele13 28666258 28668072 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g2247 4 603 Carbohydrate Esterase AT3G05610 46.179 0.0 572