Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g2230 ATGGGAAGCGGGAAGAAACACGATCTGGAGCTTGAGAAAGTTCGTTTAGTGAGCTTGGCTCTTGATTTCGGCTTCGACGAAGAATCCGCCAAAAAATGCTTGGATCGGCTTGTCGCCCTATACGGTGATGATGGCCGAGATTTTATCACTGTGGAGTACTGCGGTGATGATTTTCTAGCAGCTTTAGCCGATTCAATGCAAGATACTGAGGAATGGGATGATTTACAGGCAATAGAATCAGAAGCTTGTGGAACTTTGACTATCCTGCTTGACAAAAATGCTGTCGGGTGTAAGTATGAAGATAATGGCATTTCAGGAGGTTGCATCAATATTATTGAGGATTCTCCGGAACCTCAGAAAAACCAGAAAGTGGTGGAGTTGGTTTCAAGTGACGAGGATATGGACTTTAGTATGTCAAGGCAAAAATATGCACCTCCAGGATCTTATTTGAATAATAACATATTTGCTGGTCAACACTCTCCAATATCAGGGGACCGCAGAAGTAGCATCACTCAGGACTCAATTTCTTCAACTGCCAGCAAAATAAGGTTGTCAGAACATAATGATGAAAACCGTACTCTCACTTATGAAGAATTACAGGATCTAGATAACATGGAAATGGCAAATGTTGTTATATTTGGCAATAGGACATTTCGACCATTGCAGCATCAAGCTTGTAAAGTAGCTCTGGCAAAGCAAGATTGTTTTATTCTTATGCCGACAGGGGGTGGTAAATCTCTTTGCTATCAGCTTCCAGCAACTCTTCAATCAGGTGTTACAGTAGTTGTATCCCCCTTACTTTCACTCATTCAGGACCAGATAATCACGTTAAACCTCAAGTTTGGAATACCAGCTACATTTTTGAATTCTCAGCAAACTACTTCCCAAGCAGCAGCTGTCCTTCAAGAGCTAAGAAAAGACAAACCATCATGCAAGCTTTTGTATGTGACGCCTGAGAGAATTGCTGGCAATCAATTATTCCTCGAGGTTCTAAAATGCATGCATAACAAGGGACAGCTAGCAGGTTTTGTTGTTGATGAGGCGCACTGTGTTAGCCAATGGGGACATGATTTCCGGCCTGATTATCGGGGACTAGGATGCCTTAAGCTGAACTTTCCGGATGTGCCTGTCATGGCACTGACTGCCACTGCAACCCACTCTGTCCGCGAGGACATCTTAAGCGCTTTAAGAATCCCCCGTGCAATTGTTCTTGAAAGAAGCTTTGATAGGCCAAACTTGAAGTATGAAGTCATTGTTAAGACAAAGGAGCCGCTAAAGCAGCTTGGGAAGCTAGTATTGGATCGCTTCAAGAATCAATGTGGAATTGTTTACTGCCTTTCAAAAAGTGAATGTGTTGAGGTCTCAAAATATTTGAACCAGAAATGTAACATTAAGACAGTGTATTACCATGCTGGCTTGGCTGCCCGCCAAAGAGCTGCTGTTCAAAAGAAATGGCACGAGGGAGAGGTCCATATTGTTTGTGCAACTATTGCTTTTGGAATGGGGATAGACAAGCCTGATGTTCGCTTTGTCATCCACAATACGTTGTCTAAATCAATTGAAAGCTATTATCAAGAATCAGGAAGGGCCGGAAGAGATAATCTACCTGCAGTTTGCATTGCTCTCTACCAGAAGAAGGATTTTAGTAGAGTCGTATGCTTGATAAGAAATGGCCAAGGTTATAAAAGGGAAAGTCTTAAGTCGGCAATCGCTCAAGCCAAAAAGATGCAACAATATTGTGAACTAAAGGTAAGCATGCCCCTTTACCTTTCAGCATCTGATTTATTCTCGCTGATGAATGCCGGAGGCAAGTTTTACTCAAACACTTTGGAGAATCTCTTGACAGAAAAACCTGCAAATATGGATCTAACCCCTGTGATAATTGCCTCAAGAATGGTCCAATCTGAACTGATATTGTGA 1920 0.4224 MGSGKKHDLELEKVRLVSLALDFGFDEESAKKCLDRLVALYGDDGRDFITVEYCGDDFLAALADSMQDTEEWDDLQAIESEACGTLTILLDKNAVGCKYEDNGISGGCINIIEDSPEPQKNQKVVELVSSDEDMDFSMSRQKYAPPGSYLNNNIFAGQHSPISGDRRSSITQDSISSTASKIRLSEHNDENRTLTYEELQDLDNMEMANVVIFGNRTFRPLQHQACKVALAKQDCFILMPTGGGKSLCYQLPATLQSGVTVVVSPLLSLIQDQIITLNLKFGIPATFLNSQQTTSQAAAVLQELRKDKPSCKLLYVTPERIAGNQLFLEVLKCMHNKGQLAGFVVDEAHCVSQWGHDFRPDYRGLGCLKLNFPDVPVMALTATATHSVREDILSALRIPRAIVLERSFDRPNLKYEVIVKTKEPLKQLGKLVLDRFKNQCGIVYCLSKSECVEVSKYLNQKCNIKTVYYHAGLAARQRAAVQKKWHEGEVHIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPAVCIALYQKKDFSRVVCLIRNGQGYKRESLKSAIAQAKKMQQYCELKVSMPLYLSASDLFSLMNAGGKFYSNTLENLLTEKPANMDLTPVIIASRMVQSELIL 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g2230 639 CDD DEXHc_RecQ 212 409 - -
Lele13g2230 639 Pfam Helicase conserved C-terminal domain 434 533 IPR001650 -
Lele13g2230 639 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 424 582 IPR001650 -
Lele13g2230 639 PANTHER DNA HELICASE RECQ FAMILY MEMBER 198 581 - -
Lele13g2230 639 SMART helicmild6 452 534 IPR001650 -
Lele13g2230 639 Gene3D - 175 409 IPR027417 -
Lele13g2230 639 FunFam ATP-dependent DNA helicase 410 587 - -
Lele13g2230 639 CDD SF2_C_RecQ 410 543 - -
Lele13g2230 639 Pfam DEAD/DEAH box helicase 220 388 IPR011545 GO:0003676|GO:0005524
Lele13g2230 639 SMART ultradead3 214 418 IPR014001 -
Lele13g2230 639 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 341 350 IPR002464 -
Lele13g2230 639 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 258 554 IPR027417 -
Lele13g2230 639 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 212 573 IPR004589 GO:0004386|GO:0006310
Lele13g2230 639 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 226 402 IPR014001 -
Lele13g2230 639 FunFam ATP-dependent DNA helicase 199 409 - -
Lele13g2230 639 Gene3D - 410 590 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g2230 Lele-ChrLele13 28569315 28573726 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g2230 343 532 Eukaryotic Initiation Factors Gene Family AT5G11170 26.667 5.02e-10 59.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g2230 13 28569315 28573726 Lele15g0184 15 1102481 1106419 hybridization
Lele13g2230 13 28569315 28573726 Lele16g0194 16 1111533 1117152 hybridization