Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g2227 ATGGCTCACACCAGTAACAATGTCGCCGGGGTCGACAATACGTTCAGAAGAAAATTTGATCGAGAGGAGTATTTGGAACGAGCTCGGGAGCGTGAGAGGCAGGAAGAGGAGGCTCGATCTAGACCTAAAACCAAAGGTCCTCCAGGGCAGAGGAAACCCTTGAAACATAGAGATTATGAGGTGGACCTTGAATCCCGCTTGGGGAAGACTCAGGTTGTTACTCCAGTTGCACCTCTAAGCCAGCAGGCCGGATACTACTGCTCAGTTTGTGAGTGTGTAGTAAAGGATTCTGCAAACTACTTGGATCATATTAATGGAAAGAAACATCAACGAGCTCTGGGAATGTCTATGCGAGTAGAACGTGCTTCTCTGTCACAGGTTCAGGAACGATTTGAAGTTCTTAAAAAGCGGAAAGATCTTGGAAGCTTCACAGAGCAAGATCTGGATGACCGGATCTTAAAACAGCAACAAGAAGAGGAAGAAAGAAAGCGACAGCGACGGGAAAGGAAGAAAGAGAAGAAAGAGAAGGAAGTTGAAGAAGCACCTGAAACAGATCCTGATGTTGCCGCTATGATGGGGTTTGGTGGCTTTCGGTCATCCAAGAAATGA 609 0.4663 MAHTSNNVAGVDNTFRRKFDREEYLERARERERQEEEARSRPKTKGPPGQRKPLKHRDYEVDLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERASLSQVQERFEVLKKRKDLGSFTEQDLDDRILKQQQEEEERKRQRRERKKEKKEKEVEEAPETDPDVAAMMGFGGFRSSKK 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g2227 202 MobiDBLite consensus disorder prediction 148 202 - -
Lele13g2227 202 MobiDBLite consensus disorder prediction 20 57 - -
Lele13g2227 202 MobiDBLite consensus disorder prediction 20 44 - -
Lele13g2227 202 SUPERFAMILY beta-beta-alpha zinc fingers 80 121 IPR036236 -
Lele13g2227 202 Coils Coil 153 180 - -
Lele13g2227 202 Pfam Zinc-finger of C2H2 type 85 109 - -
Lele13g2227 202 MobiDBLite consensus disorder prediction 148 183 - -
Lele13g2227 202 FunFam zinc finger matrin-type protein 2-like 79 117 - -
Lele13g2227 202 Gene3D Classic Zinc Finger 79 117 - -
Lele13g2227 202 PANTHER ZINC FINGER MATRIN-TYPE PROTEIN 2 10 202 IPR040107 GO:0000398|GO:0005681
Lele13g2227 202 SMART ZnF_U1_5 82 116 IPR003604 GO:0003676|GO:0008270
Lele13g2227 202 Coils Coil 21 41 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g2227 Lele-ChrLele13 28562909 28565072 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g2227 4 147 C2H2 Transcription Factor Family AT3G05760 79.861 9.28e-83 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele13g2227 zf-C2H2_jaz 1.8e-06 CL0361