Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g2222 ATGGATCATAATTACAGGTTCGACGAACATGGCCTCCCCCTCCAAGCGCCCTCCGGATCAGATTGCTTCTTCAAGACCCAGATCGCCAATCACCCTCTTTATCCTAACTTGCTCTCTGCCTACTTAGACTGCCAAAAGGTCGGAGTCACCCCAGAAAGATTATCCCTTCTCGAAGAAATAGGGCAGCAACACCACCTCGTCAACACTCCTCGTGAGATAGGCGACGACCCTGAACTTGACCACTTCATGGTACACTCGTATTTACATATGCATACTGTACTGTGGGAATCATACTGTGGAGTTCTACATAGATACAAAGAGGAGCTGTCCAGGCCCTTCGACGAAGCCTCCTTGTTTCTCTGCACTATGGAATCAAAACTCCGCAATCTTTGCAACGGAACGTTCACAATTTCATCGGCTCCTCTCTCTGGTGGATCTATTTCAGATGAGCGAGGTGGGAGTAAAGAGAAGGGAATAAGTTGTGGAGATGCAGAAGCAAATGAAGGTGATGGGAGGCGTTTTGGAGGAGATAAAGAGCTAAGAGAAATGCTGCTCCGCAAGTACAGTGGCTACCTGAGCAGTTTGAGGAAGGAGGTGTTGAAGAAAAAGAAAAAGAATAAGCTTCCAAAGGATGCGAGGATGGCTCTCCTTCAATGGTGGAACTCCCACTACAGATGGCCTTATCCTACGGAAGAGGAGAAATTGAAGCTATCAGAAATGACTGGGCTTGATCAAAAGAAGATCAATAATTGGTTCATCAATCAGAGGAAACGCCATTGGAAACCATCCGAAGATATGCGCATCTCACTCATGGAAGGTGTCACTGGTGGTGGCAGAGGTTGA 843 0.4709 MDHNYRFDEHGLPLQAPSGSDCFFKTQIANHPLYPNLLSAYLDCQKVGVTPERLSLLEEIGQQHHLVNTPREIGDDPELDHFMVHSYLHMHTVLWESYCGVLHRYKEELSRPFDEASLFLCTMESKLRNLCNGTFTISSAPLSGGSISDERGGSKEKGISCGDAEANEGDGRRFGGDKELREMLLRKYSGYLSSLRKEVLKKKKKNKLPKDARMALLQWWNSHYRWPYPTEEEKLKLSEMTGLDQKKINNWFINQRKRHWKPSEDMRISLMEGVTGGGRG 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g2222 280 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 29 268 - -
Lele13g2222 280 MobiDBLite consensus disorder prediction 146 173 - -
Lele13g2222 280 Pfam Homeobox KN domain 219 258 IPR008422 GO:0003677|GO:0006355
Lele13g2222 280 SMART ELK_2 179 200 IPR005539 GO:0003677
Lele13g2222 280 SMART KNOX1_2 22 66 IPR005540 GO:0003677|GO:0005634
Lele13g2222 280 SMART HOX_1 201 266 IPR001356 GO:0003677
Lele13g2222 280 Pfam ELK domain 179 198 IPR005539 GO:0003677
Lele13g2222 280 Gene3D - 197 270 - -
Lele13g2222 280 SUPERFAMILY Homeodomain-like 201 271 IPR009057 -
Lele13g2222 280 Pfam KNOX1 domain 25 64 IPR005540 GO:0003677|GO:0005634
Lele13g2222 280 ProSitePatterns 'Homeobox' domain signature. 237 260 IPR017970 GO:0000981|GO:0006355
Lele13g2222 280 ProSiteProfiles 'Homeobox' domain profile. 199 262 IPR001356 GO:0003677
Lele13g2222 280 MobiDBLite consensus disorder prediction 150 173 - -
Lele13g2222 280 CDD homeodomain 211 263 IPR001356 GO:0003677
Lele13g2222 280 SMART KNOX2_2 69 132 IPR005541 GO:0003677|GO:0005634
Lele13g2222 280 Pfam KNOX2 domain 96 131 IPR005541 GO:0003677|GO:0005634
Lele13g2222 280 ProSiteProfiles ELK domain profile. 179 199 IPR005539 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g2222 Lele-ChrLele13 28547713 28551224 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g2222 24 272 Homeobox Transcription Factor Family AT1G70510 48.221 1.31e-75 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Lele13g2222 KNOX1 5e-18 No_clan