Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g2219 ATGGATTTCCAGGGTTTCTTGAATGGCTTGCAAGATTGGGAACTTTCTCGTAAGGAGAAAGCGCGAAAAATGAAGTCACAAGCGTCGCAAAAGGAAAAAGATCTGATTAACAGACAATATGATTTCTCAAGAAATAAAGATTCTTTTGATCATGTCCATAATAGTCTCTCCATTGAAGATGTTCCCAATGCTGCTTCGAAAAAAGAACTTGGTAATGAATACTTCAAGCAGAAGAAGTTTAAGGAAGCTATTGACTGCTATTCAAGAAGTATTGCCTTCTCACCAACAGCTGTGGCATATGCAAATAAAGCAATGGCCTTTGTCAAACTCAAAAGGCATGCTTTAGCTGAGGATGACTGTACAGAGGCCTTATATCTAGATGATAGTTACATAAAAGCATACTCACGTCGAACAACTGCTAGAAAAGAACTTGGGAAACTTAAAGAAGCAATGGAGGATGCTAAATTTGCTCTGCACTTGGAACCTGAAAATCAAGAAATCAAGAAACAGTATGCTGATATCAAATCTTTGTATGAGAATGAAATTCTTCAGAAAGCATCTGGAGATCTGAGAAGCTCTCTACAGGGAAATCAAAAGAGCAATGATAAAAAGGTTCCAGCAAAAGCAGTTCTCATGTTCGAGGAACTAGATAGCAAGGAGAAAAGATCTGAAGGAAAGGCTGGAGGACAAGAAATTGTTTCAGTCCTAGCAAAAGTTTGGGGAGTGTTAGGGTTTATTGTGAAATCCTATCTAAGCTTATGA 762 0.3806 MDFQGFLNGLQDWELSRKEKARKMKSQASQKEKDLINRQYDFSRNKDSFDHVHNSLSIEDVPNAASKKELGNEYFKQKKFKEAIDCYSRSIAFSPTAVAYANKAMAFVKLKRHALAEDDCTEALYLDDSYIKAYSRRTTARKELGKLKEAMEDAKFALHLEPENQEIKKQYADIKSLYENEILQKASGDLRSSLQGNQKSNDKKVPAKAVLMFEELDSKEKRSEGKAGGQEIVSVLAKVWGVLGFIVKSYLSL 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g2219 253 ProSiteProfiles TPR repeat profile. 131 164 IPR019734 GO:0005515
Lele13g2219 253 Coils Coil 18 38 - -
Lele13g2219 253 SMART tpr_5 98 130 IPR019734 GO:0005515
Lele13g2219 253 SMART tpr_5 64 97 IPR019734 GO:0005515
Lele13g2219 253 SMART tpr_5 131 164 IPR019734 GO:0005515
Lele13g2219 253 Pfam Tetratricopeptide repeat 99 128 IPR019734 GO:0005515
Lele13g2219 253 Pfam Tetratricopeptide repeat 68 96 IPR001440 GO:0005515
Lele13g2219 253 Gene3D Tetratricopeptide repeat domain 52 162 IPR011990 GO:0005515
Lele13g2219 253 ProSiteProfiles TPR repeat profile. 64 97 IPR019734 GO:0005515
Lele13g2219 253 PANTHER OS05G0129900 PROTEIN 1 222 - -
Lele13g2219 253 SUPERFAMILY TPR-like 62 176 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g2219 Lele-ChrLele13 28529464 28532347 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g2219 26 168 Calmodulin-binding Proteins AT3G25230 29.878 7.13e-09 53.9