Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g2216 ATGCGAAGGTACTCGAGAAGGATTTCCAAGGCTAACATCATGGCCCCTCAAATCGATCCCACTGATGCTCCAAAACGGCGCCCGTCTAGTGATTCGGACACTTTTTATCACAAACTCAACCAAGTGTGGGAATCCTACGGACTCGGTCTAATTATAAATGCCCGAAAAACTTCGTTGGACTTGTTCCTCTTTTACTCGGAGGTGACCCGAAGGGGAGGATATCATCAGGTCAGTAGAGACGGGAAATGGGATGAAATTGTCTCCTCCTTAAAGTTGCAAGGCAATAATGCAAAGTTACCTGTTCAACTTGAAAAGTGCTACGCTATACTTCTTTACCCGTTTGAGCAACTCTACCACTACAGGGATCCGGCTCAGAAATCTGCCACTAACCCCATCTTAGGTCTGTTCACGGATGGCACAAGCTCAGACAGGAAGCGTAAAGATGAGGTTAGTTTATCTGAATTAACGGACAATGAAGATGGTGAGGGGGAGACAGAGATGCGCAAGGAAATGACAGGGAGCGAGGTTGCGGAACAGAAAATGTTGGTACAGGCATCCCCAGATGACAAGAAAGTGAAGAAACGCCGTGGAGGTGCTCTGCGGGGACATAAAACTGCATATCAGATATTCATCAAGCAGGAATGCGCCCGGTTGAGAAGCTGTAATGAGGCATCTGCTCGCTCAAATGTCCTGCACATGGCCATTGATGCATGGAAGAATTTGACTGAGATTGAGAGACAGCCTTTTGTGGAAGAAAGCAACAAGGGAAAAGAAAGGCTGATGGGAGCAATGAAAACTGGAGATCAGGATGCAGAGAGATGCGGTGATGGCTTAGAGCTTATAATGAGCGAAGAATCCAGAGGGACATTAACTATTGACATGGGGTATATAGCAAGTGAAGCATGA 906 0.4658 MRRYSRRISKANIMAPQIDPTDAPKRRPSSDSDTFYHKLNQVWESYGLGLIINARKTSLDLFLFYSEVTRRGGYHQVSRDGKWDEIVSSLKLQGNNAKLPVQLEKCYAILLYPFEQLYHYRDPAQKSATNPILGLFTDGTSSDRKRKDEVSLSELTDNEDGEGETEMRKEMTGSEVAEQKMLVQASPDDKKVKKRRGGALRGHKTAYQIFIKQECARLRSCNEASARSNVLHMAIDAWKNLTEIERQPFVEESNKGKERLMGAMKTGDQDAERCGDGLELIMSEESRGTLTIDMGYIASEA 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g2216 301 Gene3D High mobility group box domain 186 266 IPR036910 -
Lele13g2216 301 CDD ARID 31 115 - -
Lele13g2216 301 MobiDBLite consensus disorder prediction 140 154 - -
Lele13g2216 301 Gene3D - 12 131 IPR036431 GO:0003677
Lele13g2216 301 SMART bright_3 30 120 IPR001606 GO:0003677
Lele13g2216 301 SMART ARID_2 26 115 - -
Lele13g2216 301 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 164 277 - -
Lele13g2216 301 SUPERFAMILY ARID-like 30 122 IPR036431 GO:0003677
Lele13g2216 301 Pfam HMG-box domain 201 265 IPR009071 -
Lele13g2216 301 ProSiteProfiles ARID domain profile. 29 119 IPR001606 GO:0003677
Lele13g2216 301 Pfam ARID/BRIGHT DNA binding domain 32 115 IPR001606 GO:0003677
Lele13g2216 301 MobiDBLite consensus disorder prediction 137 175 - -
Lele13g2216 301 SUPERFAMILY HMG-box 186 265 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g2216 Lele-ChrLele13 28511081 28512865 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g2216 58 259 ARID Transcription Factor Family AT1G55650 25.701 7.83e-13 66.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Lele13g2216 ARID 1.6e-13 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g2216 13 28511081 28512865 Lele06g0042 06 303198 306115 CCT
Lele13g2216 13 28511081 28512865 Lele07g0237 07 1311342 1313349 CCT
Lele13g2216 13 28511081 28512865 Lele08g0041 08 280583 283574 CCT
Lele13g2216 13 28511081 28512865 Lele15g0196 15 1160165 1161964 hybridization