Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g2204 ATGATACGTGCGCAGCCTCGCTTTCACATTACCTGTGACTTGAGGACAAGTTACACGCTGGAACGCAACTTAAGTGAAGAGATGGGGCTGTCTTTCACCAAACTGTTTAGTCGACTCTTTGCAAAGAAAGAGATGCGTATTCTCATGGTAGGTCTTGATGCTGCTGGTAAGACCACCATCTTGTACAAGCTCAAGCTGGGAGAGATCGTAACTACCATCCCTACAATCGGATTTAATGTGGAGACCGTGGAATACAAAAACATTAGCTTCACGGTCTGGGATGTAGGGGGCCAAGACAAGATTCGTCCTCTATGGAGACACTACTTCCAAAATACCCAGGGGCTTATCTTTGTGGTTGATAGCAATGATCGAGATCGTGTTGTTGAGGCTAGAGATGAACTCCACCGGATGTTGAATGAGGATGAGTTGAGAGATGCGGTGCTGCTTGTATTTGCCAACAAGCAAGATCTACCAAATGCCATGAATGCTGCAGAAATCACGGACAAACTTGGTCTTCATTCTCTTCGTCAACGCCACTGGTATATCCAAAGCACATGTGCCACTTCTGGGGAAGGACTCTACGAGGGACTGGATTGGCTTTCCAACAACATAGCCAACAAGGCTTGA 627 0.4657 MIRAQPRFHITCDLRTSYTLERNLSEEMGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g2204 208 Pfam ADP-ribosylation factor family 32 204 IPR006689 GO:0003924|GO:0005525
Lele13g2204 208 PANTHER ADP RIBOSYLATION FACTOR-RELATED 34 203 IPR024156 GO:0005525
Lele13g2204 208 FunFam ADP-ribosylation factor 1 28 208 - -
Lele13g2204 208 CDD Arf1_5_like 45 203 IPR045872 GO:0003924
Lele13g2204 208 ProSiteProfiles small GTPase Arf family profile. 38 204 - -
Lele13g2204 208 Gene3D - 31 208 IPR027417 -
Lele13g2204 208 PRINTS GTP-binding SAR1 protein signature 74 98 IPR006689 GO:0003924|GO:0005525
Lele13g2204 208 PRINTS GTP-binding SAR1 protein signature 101 126 IPR006689 GO:0003924|GO:0005525
Lele13g2204 208 PRINTS GTP-binding SAR1 protein signature 46 69 IPR006689 GO:0003924|GO:0005525
Lele13g2204 208 PRINTS GTP-binding SAR1 protein signature 146 167 IPR006689 GO:0003924|GO:0005525
Lele13g2204 208 SMART arf_sub_2 28 208 - -
Lele13g2204 208 SMART sar_sub_1 28 204 IPR006689 GO:0003924|GO:0005525
Lele13g2204 208 SMART rab_sub_5 45 207 - -
Lele13g2204 208 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 41 206 IPR027417 -
Lele13g2204 208 TIGRFAM small_GTP: small GTP-binding protein domain 43 184 IPR005225 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g2204 Lele-ChrLele13 28470134 28473979 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g2204 13 28470134 28473979 Lele13g2204 13 28470134 28473979 ECH
Lele13g2204 13 28470134 28473979 Lele15g0210 15 1205240 1207342 hybridization
Lele13g2204 13 28470134 28473979 Lele16g0217 16 1209090 1217213 hybridization