LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele13g2188	ATGGGAAGACACCCTTGCTGTTTCAAGCAAAAGCTAAGGAAAGGCCTCTGGTCACCAGAGGAAGACGAGAAGCTTCTCAATTATATCACCAAGCATGGCCATGGATGTTGGAGCTCTGTCCCCAAACTAGCTGACTTGCAGAGATGTGGCAAGAGCTGCAGATTGAGGTGGATAAATTATCTGAGGCCTGATTTGAAGAGAGGAGCATTCTCCCAACAGGAAGAGAATTTGATTATTGAGCTCCATGCAGCACTGGGAAACAGGTGGTCTCAAATTGCAGCTCAGTTACCGGGAAGGACCGACAACGAGATCAAGAATCTATGGAATTCCTGCCTGAAAAAGAAGCTCAGGCAAAGAGGCATTGACCCAAACACCCACAAACCTCTCTCTGATGTTGAGAGCCACAAGGACAAGCAGACCAATCAGAAAACCTCAGTATTCAATGAACACTCTTTGGCTCATGGGTCAACAGAACCAAAACCTGCACAATTATACCCTCCTCTTCAAGTTTCAACCCAATCCAACTTCAACAACAACAGCAACAATAATTCCCATGATCTATTTCTGGATAGGTCTTATTTCTCTTTCCAACCCTTCAACGACTATGCAACAAATCCTGACACCAGTACTTCTCTTTGCTTCATTCCTAGCTCTATCAGTTTCTCTCAGGTTATGTCAGACCTTAATTCGGCTGTTACTCCCACCATGCTCCATCCAATTTTGCCCACAAATGCAAATCCCACTCTTAGCCTCCAATCTGATCATATTCATGGTGTTCAGGCATGGGAAGCCACCGCCTTTAATAACAATGGAAGCAAAAACAGTGGGAGCAATAGTGATATACCATTACAAAACGGCAATAACTTCATCGACAACAACACTTTAACGTGGGAAAAGGATTTCCATGTTAATAACGTAGTACCCTTACAAGCAGAACAAGAAGACATAAAATGGTCCGAGTATCTTAATACCCCATTTTTTCTGGGCAATCAAATCTCTCAGTCTATCGACAGTGAGGTTAAACCAGAAACGGGGTTCATAACAGATGAGGCGAGTATTAGTTGGCACCATAATGGCCAGCAGCATCCACAAGTTTTCCAAGCTTCAGATATATATACCAAGGATATGCAGAGATTTTCAGTGGCTTTTGGACAAACGCTTTAG	1164	0.4338	MGRHPCCFKQKLRKGLWSPEEDEKLLNYITKHGHGCWSSVPKLADLQRCGKSCRLRWINYLRPDLKRGAFSQQEENLIIELHAALGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPNTHKPLSDVESHKDKQTNQKTSVFNEHSLAHGSTEPKPAQLYPPLQVSTQSNFNNNSNNNSHDLFLDRSYFSFQPFNDYATNPDTSTSLCFIPSSISFSQVMSDLNSAVTPTMLHPILPTNANPTLSLQSDHIHGVQAWEATAFNNNGSKNSGSNSDIPLQNGNNFIDNNTLTWEKDFHVNNVVPLQAEQEDIKWSEYLNTPFFLGNQISQSIDSEVKPETGFITDEASISWHHNGQQHPQVFQASDIYTKDMQRFSVAFGQTL	387

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele13g2188	387	Gene3D	-	11	67	-	-
	Lele13g2188	387	SUPERFAMILY	Homeodomain-like	12	108	IPR009057	-
	Lele13g2188	387	SMART	sant	13	63	IPR001005	-
	Lele13g2188	387	SMART	sant	66	114	IPR001005	-
	Lele13g2188	387	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	62	116	IPR017930	-
	Lele13g2188	387	CDD	SANT	17	61	IPR001005	-
	Lele13g2188	387	FunFam	MYB transcription factor	68	140	-	-
	Lele13g2188	387	FunFam	Myb transcription factor	11	67	-	-
	Lele13g2188	387	ProSiteProfiles	Myb-like domain profile.	9	61	IPR001005	-
	Lele13g2188	387	ProSiteProfiles	Myb-like domain profile.	62	112	IPR001005	-
	Lele13g2188	387	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	9	61	IPR017930	-
	Lele13g2188	387	MobiDBLite	consensus disorder prediction	119	143	-	-
	Lele13g2188	387	MobiDBLite	consensus disorder prediction	166	182	-	-
	Lele13g2188	387	MobiDBLite	consensus disorder prediction	119	182	-	-
	Lele13g2188	387	CDD	SANT	69	109	IPR001005	-
	Lele13g2188	387	Pfam	Myb-like DNA-binding domain	14	61	IPR001005	-
	Lele13g2188	387	Pfam	Myb-like DNA-binding domain	67	111	IPR001005	-
	Lele13g2188	387	PANTHER	MYB DOMAIN PROTEIN 55	1	287	-	-
	Lele13g2188	387	Gene3D	-	68	147	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele13g2188	Lele-ChrLele13	28401359	28402749	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele13g2188	1	387	MYB Transcription Factor Family	AT1G09540	46.699	3.21e-104	310

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Lele13g2188		Myb_DNA-binding	2.9e-14	CL0123