Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g2186 ATGGGAATAAAATTTCTACAGATGCACCGAACTGTCCCTCTTCTGGGATACGTTACATTTACTCAAGGCGCGGGAAGCAGTTCGTTCGTTGCTCCTGAAAGGCTGTTCGCCACAAATAGAATGGGAGTAAAGGGTTTAACAAAGCTGTTAACGGATAATGCCCCCAAAGCTGTAAAGGAGCGTAGCTTCCAAAGCTATTTTGGCCGCAAGATTGCCATTGACGCTAGCATGAGCATTTACCAGTTCCTCGTTGTCGTGGGAAGAAGTGGGACTGAGATGCTCACCAATGAGGCTGGTGAAGTAACTAGTCATTTGCAAGGCATGTTTACCCGGACAGTCAGACTTCTAGAAGCCGGAATGGAGCCAGTATATGTTTTTGATGGGAAGCCACCTGATCTGAAGAAGCAGGAGCTGGCTAAACGTTACTCAAAGAGGGCTGAAGCTCATGAGGATTTGTCAGAGGCCATTGAGTCTGGTAACAAGGAAGACATTGAAAAATTCAGTAAACGGACAGTCAAGGTGACAAAGCAGCATAGCGACGGTTGTAAAAGACTTTTATCACTCATGGGAGTGCCTGCTATTGAGGCGACATCAGAAGCTGAAGCACAGTGTGCTGCACTTTGCAAATCTGGAAAGGTTTATGCAGTGGCTTCTGAAGACATGGATTCATTAACGTTTGGAGCTCCTAGATTTATTCGCCATCTAATGGTTCCTAGCTCAAAGAAAGTTCCAGTTATGGAATTCGAAGTTGACAAGATATTGGAGGAGCTAAATCTGACCATGGATCAGTTTATAGACTTATGTATTCTTTCTGGATGTGATTATTGTGGAAGCATTGGAGGTATTGGTGGTAAGACTGCTTTGAAGCTCATTCACCAGCATAGCTGTATAGAGAACATATTAAAGAACATAAATAAAGAGAGGTACCAGATACCAGATTATTGGCCATATCAGGAGGTTAGGCAGCTTTTTAAGGAACCAGCAGTCTTAGCTGAAGAAAAGCAACTAGACCTTAAGTGGACTGCTCCTGATGAAGAAGGTTTAATGACATTTCTGGTAAATGAGAATGGATTCAACAGAGATAGGGTGACAAAGGCGATAGAAAAAATTAAGGCCGCAAAGAACAAGTCATCACAGGGCCAATCAGAATCTGTTTTTAAGCCAATGGCTAACTACTATGCACCCATTAAAGGGAAGGGGAGCAAATGCATGCTTAGATCCTTTAAACCTACAGCTAAGTGTAAGATGTTATCCCCACAACTTTATAACTGGTCAAGGCCCATGGCTATCGGCAACCTGAGCATTGCCTGCGCGGGTTTCAAGCTCTCTGTCATGACATAG 1341 0.4362 MGIKFLQMHRTVPLLGYVTFTQGAGSSSFVAPERLFATNRMGVKGLTKLLTDNAPKAVKERSFQSYFGRKIAIDASMSIYQFLVVVGRSGTEMLTNEAGEVTSHLQGMFTRTVRLLEAGMEPVYVFDGKPPDLKKQELAKRYSKRAEAHEDLSEAIESGNKEDIEKFSKRTVKVTKQHSDGCKRLLSLMGVPAIEATSEAEAQCAALCKSGKVYAVASEDMDSLTFGAPRFIRHLMVPSSKKVPVMEFEVDKILEELNLTMDQFIDLCILSGCDYCGSIGGIGGKTALKLIHQHSCIENILKNINKERYQIPDYWPYQEVRQLFKEPAVLAEEKQLDLKWTAPDEEGLMTFLVNENGFNRDRVTKAIEKIKAAKNKSSQGQSESVFKPMANYYAPIKGKGSKCMLRSFKPTAKCKMLSPQLYNWSRPMAIGNLSIACAGFKLSVMT 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g2186 446 SMART xpgn3 41 148 IPR006085 GO:0004518
Lele13g2186 446 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 68 82 IPR006084 -
Lele13g2186 446 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 207 227 IPR006084 -
Lele13g2186 446 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 186 203 IPR006084 -
Lele13g2186 446 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 264 279 IPR006084 -
Lele13g2186 446 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 122 141 IPR006084 -
Lele13g2186 446 SUPERFAMILY PIN domain-like 42 274 IPR029060 -
Lele13g2186 446 Pfam XPG I-region 190 274 IPR006086 GO:0004518
Lele13g2186 446 Pfam XPG N-terminal domain 41 148 IPR006085 GO:0004518
Lele13g2186 446 SMART xpgineu 187 259 IPR006086 GO:0004518
Lele13g2186 446 CDD PIN_FEN1 44 372 - -
Lele13g2186 446 FunFam Flap endonuclease 1 50 262 - -
Lele13g2186 446 CDD H3TH_FEN1-Euk 262 330 - -
Lele13g2186 446 Gene3D - 42 258 - -
Lele13g2186 446 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 41 388 IPR006084 -
Lele13g2186 446 Gene3D - 259 326 - -
Lele13g2186 446 Hamap Flap endonuclease 1 [fen]. 41 387 IPR023426 GO:0016788
Lele13g2186 446 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 259 390 IPR036279 -
Lele13g2186 446 SMART HhH_4 261 294 IPR008918 GO:0003677|GO:0003824
Lele13g2186 446 FunFam Flap endonuclease 1 259 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g2186 Lele-ChrLele13 28388422 28393400 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g2186 41 424 Core DNA Replication Machinery Family AT5G26680 77.344 0.0 637
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g2186 13 28388422 28393400 Lele15g0226 15 1283890 1288197 hybridization