Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g2180 ATGTCTTCTGTAATAGGCGTTTCGTCTATATACCAGACTCCGTCTCCGGAGCTACATAAAAGAGCTACAACAACAATAGGTGCTACCACCTACCTTTCCTTCCAATTTTCTGACAACAAGTCCCACTTCAACAACTTTCTGAGAGCTCACCTCAGTAACAGTGGCAGCGGAAATTTTAAGAGTGTGACTAAACCTAGAACTAACTTTGTTCCTTCTTCAATTGCCACGCCCAACTCTTCCGTTCTGAGTGAAGAAGCGTTCAAGGGCATAGTTGGGGGTTTCTCCGACAAAGACCCTTTGGATGATGTTATTGAAAACGATGACTATGGCTATGACTCTGAAACTGAGGTTTCGTCTGCTGTTGACAACGAGGAGGAGCTCGACATTTCCAAGCTGGACTTGCCTTCGCGCCTTGTGGAATCACTACAGCAACGTGGGATTACTCATCTTTTCCCCATTCAGAGAGCTGTTTTAGTGCCGGCTCTTCAAGGTCGAGATCTTATTGCCCGAGCAAAGACTGGGACTGGAAAGACATTGGCATTTGGGATTCCAATTATTAAAGGGCTCACAGACGATGAACAAAGTACCTCCCAGAGACGATCTGGTCGTCTTCCCAAAGTATTGGTCCTTGCACCTACCAGGGAGTTAGCAAAGCAAGTGGAGAAAGAGATAAAAGAATCTGCACCCCATTTGAGCACAGTCTGTGTTTATGGGGGCGTTTCTTATGTTACACAACAAAATGCACTTTCTCGTGGTGTTGATGTAGTGGTTGGAACACCTGGTAGAATAATTGACCTAATAAACGGGAACAGTCTTAAACTGAGTGAAGTGCAGTATTTGGTCCTTGATGAGGCTGATCAGATGCTTGCTGTTGGGTTTGAGGAGGACGTAGAAGTAATTTTGGAGAAACTGCCATCAGAACGGCAGAGCATGCTTTTTTCTGCAACCATGCCTGCCTGGGTGAAGAAACTTGCCAGAAAATATTTGGACAATCCATTGACAATTGATTTGGTTGGTGAAGAAGAGGAAAAACTTGCGGAAGGGATCAAACTTTATGCAATATCAGCCACCGCCACTTCTAAGCGAACAATGCTTTCTGATCTGATAACTGTTTATGCAAAGGGGGGAAAGACTATTGTTTTTACCCAGACAAAACGAGATGCTGATGAAGTATCGTTGGCATTAACAAATAGCATACCTTCTGAGGCACTGCATGGCGATATATCTCAGCATCAGAGAGAGAGAACATTGAATGGTTTTCGGCAAGGGAAATTCACAGTTCTTGTTGCCACTGATGTAGCAGCACGTGGACTTGATATTCCTAATGTTGATCTGGTTATTCACTATGAACTTCCCAATGACCCTGAGACATTTGTACATCGCTCTGGTCGTACTGGGCGTGCTGGAAAGCAAGGTACTGCCCTTTTGATGTACACCAGTAGCCAGAGGAGAACAGTTAGATCTCTTGAGCGTGATGCAGGCTGTAAATTCGAATTTATTACTCCGCCAGCTATAGATGATGTTTTGGAATCCTCAGCTGACCAAGTGGTTGCCACACTTAATAGAGTTCATCCTGAATCCGTTGAGTTTTTCACTCCAACTGCACAAAAATTGATTGAGGAACTAGGAACAAGTGCCCTTGCAGCTGCACTAGCACAACTAAGTGGATTTTCAAAACCTCCCTCATCCCGGTCTCTTATCAACCATGAGCAGGGATGGGTTACTTTACGACTAACTCGAGATCAAGGAGACTCTAGAAGGTTTTTGTCTGCAAGATCGGTCACTGGGTTTCTTTCCGATGTTTATTCTCCAGCTGCTGACGAAGTTGGAAAAATACATATAATTGCAGACGAAAGGGTTCAAGGGGCCGTTTTTGATCTTCCCGAGGAGATTGCTAAAGAGTTACTGAACAAGGAAATACCACCTGGCAACACAATTTCTAAGATTACCAAGTTGCCTCCTTTGCAAGATGATGGGCCTCCAAGTGATTTCTATGGGAAGTTTTCTGACAGAGATCGTAGAGGTTCTAGGGATCGGAGAGGGTTTAAAACCTCTCAGAGTCGGGATGGGGGCCGTGATTTTGATGGTGAATTTGGTGATTCATATAGAAGAGGTGGTCGAAGTTTTAGAACTGGCAATAACTGGTCTCAAAAGGCAAGAAACAGTGGAAGCTTTGATGATTTTGGCGATTCAAACAGGAAAGGTGGTCGAAGTAATAGAACTGGCAATAGCTGGTCTCAAAAGGCAAGAAGCAGCGATGATGATTGGCTAATTGGAGGCAGAAGATCAAGCAGGTCTTCATCGTTAGACAGAGGCGGCTTTGGAGGGGCTTGCTTTAATTGTGGGCAATCTGGACATCGTGCATCCGAATGTCCCAACAAACTTGGCTTCTAA 2394 0.4453 MSSVIGVSSIYQTPSPELHKRATTTIGATTYLSFQFSDNKSHFNNFLRAHLSNSGSGNFKSVTKPRTNFVPSSIATPNSSVLSEEAFKGIVGGFSDKDPLDDVIENDDYGYDSETEVSSAVDNEEELDISKLDLPSRLVESLQQRGITHLFPIQRAVLVPALQGRDLIARAKTGTGKTLAFGIPIIKGLTDDEQSTSQRRSGRLPKVLVLAPTRELAKQVEKEIKESAPHLSTVCVYGGVSYVTQQNALSRGVDVVVGTPGRIIDLINGNSLKLSEVQYLVLDEADQMLAVGFEEDVEVILEKLPSERQSMLFSATMPAWVKKLARKYLDNPLTIDLVGEEEEKLAEGIKLYAISATATSKRTMLSDLITVYAKGGKTIVFTQTKRDADEVSLALTNSIPSEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKQGTALLMYTSSQRRTVRSLERDAGCKFEFITPPAIDDVLESSADQVVATLNRVHPESVEFFTPTAQKLIEELGTSALAAALAQLSGFSKPPSSRSLINHEQGWVTLRLTRDQGDSRRFLSARSVTGFLSDVYSPAADEVGKIHIIADERVQGAVFDLPEEIAKELLNKEIPPGNTISKITKLPPLQDDGPPSDFYGKFSDRDRRGSRDRRGFKTSQSRDGGRDFDGEFGDSYRRGGRSFRTGNNWSQKARNSGSFDDFGDSNRKGGRSNRTGNSWSQKARSSDDDWLIGGRRSSRSSSLDRGGFGGACFNCGQSGHRASECPNKLGF 797
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g2180 797 MobiDBLite consensus disorder prediction 735 751 - -
Lele13g2180 797 Pfam Helicase conserved C-terminal domain 362 469 IPR001650 -
Lele13g2180 797 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 206 490 IPR027417 -
Lele13g2180 797 CDD GUCT_Hera 563 643 - -
Lele13g2180 797 SUPERFAMILY Retrovirus zinc finger-like domains 759 795 IPR036875 GO:0003676|GO:0008270
Lele13g2180 797 Pfam DEAD/DEAH box helicase 151 324 IPR011545 GO:0003676|GO:0005524
Lele13g2180 797 Gene3D - 764 796 - -
Lele13g2180 797 CDD DEADc 138 336 - -
Lele13g2180 797 MobiDBLite consensus disorder prediction 707 728 - -
Lele13g2180 797 Gene3D - 128 339 IPR027417 -
Lele13g2180 797 MobiDBLite consensus disorder prediction 642 773 - -
Lele13g2180 797 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 158 335 IPR014001 -
Lele13g2180 797 SMART c2hcfinal6 777 793 IPR001878 GO:0003676|GO:0008270
Lele13g2180 797 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 118 685 - -
Lele13g2180 797 CDD SF2_C_DEAD 349 478 - -
Lele13g2180 797 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 364 509 IPR001650 -
Lele13g2180 797 SMART helicmild6 389 469 IPR001650 -
Lele13g2180 797 FunFam ATP-dependent RNA helicase RhlE 118 338 - -
Lele13g2180 797 MobiDBLite consensus disorder prediction 664 704 - -
Lele13g2180 797 FunFam Nucleolar RNA helicase II 357 547 - -
Lele13g2180 797 Pfam GUCT (NUC152) domain 556 656 IPR012562 GO:0003723|GO:0004386|GO:0005524
Lele13g2180 797 Pfam Zinc knuckle 777 793 IPR001878 GO:0003676|GO:0008270
Lele13g2180 797 ProSiteProfiles Zinc finger CCHC-type profile. 778 793 IPR001878 GO:0003676|GO:0008270
Lele13g2180 797 SMART ultradead3 146 352 IPR014001 -
Lele13g2180 797 Gene3D - 351 550 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g2180 Lele-ChrLele13 28367493 28372550 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g2180 105 491 Eukaryotic Initiation Factors Gene Family AT1G72730 35.859 4.45e-63 216