LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele13g2179	ATGGCTCACGTAGGGGCGACCCGGGGCCTGCTGGATGCAGTGGAGTCTGAGAGAGATTGCGAAGCATTAGAGATCGAAGCAGCAAAGCTCCTGAAGAGGCCCCCGCGAGAGAGTATATCAATGGCTTTCTGGGGAAAAGTCAGCCTCTCCTCTATATGTCGTGCTCTAATCTTAGCCAATAATCGGAGCAATATTTCCTTCGCCTCCTCTTTCTTCTGTAGGCGCCTCCCATGCAGATTTTCTGCATTGCCTTTGCCTTCCTCTGCACATCCTTTCCTTAAAATCGCCAGCTTCAATAATACTAGTACTCGGTTATTTTGTAGTTCAGAAGCAAATCCCGCCAAGAAGAAGGTCGACACCAAAGTCAACTTTTCTCTATCCGATTCTGATTCTGAGGATGAAAACGAGGACGATTCTAAAACTCCACAGAAAGAAACTAACAAGAATAAGAAGCTGCCACCGCCTTATGACCCCTTTAACAAGAAGCCGGCGATTGAAGAGCCGAAGGATCCAAAAGATTTGCAAGAGATCTTTCACAACATGAGAAGCGGCGATGGATTGTTAAATCACGCAGTCAAGATGTTCGACGCATTGTCCAAAGACGGTCTCACCCACGAGGCTTTGGAGCTGTTCGGTCAGATAAAAGACAAAGGTCAAATGCCCGACGTGGTGGCTCACACGGCCATTATCGAGTCCTATACCAATGCTGGTCAGCCCAAGGAGGCCCTCAAAGTTTATATGCGCATGCTGGCTTCTGGGGTGTCTCCCAATGCTTATACCTACACTGTTCTTATTAAGGGACTTGCTTCTGATTCTAAGTTTTTGGGAGATGCCAAGAAGTATGTGTTGGAAATGATGGAAAAGGGCATGAAACCCAATGCTGTGACTTACACGGCCGTGTTTGAGGGATTGGCTAGGGATGACAAAGCGGAGGAGGCCACAGAGTTTTTGGAGCAAATGAAGACCAAGGGATTTGTAGCTGATGAGAAGGCTGTGAGGGAAGTTCTGAGGAGCAAGAGGGGTCCCATTTTCAGAACCGTCTTGAGTATTCTTTTTGGCAGAATGCGAACCAATGCAGATTTTAGTGACCTCAACGATTCGAACTCAATTTCAAAGGAAAGTGCTAGTCTTATCCAAAACCTTGCAGCCAATCATACTAGCTCGTATTGGCTCATCCATTCATTTAAAGTTATTCCGATCGTTTTCTGA	1209	0.4648	MAHVGATRGLLDAVESERDCEALEIEAAKLLKRPPRESISMAFWGKVSLSSICRALILANNRSNISFASSFFCRRLPCRFSALPLPSSAHPFLKIASFNNTSTRLFCSSEANPAKKKVDTKVNFSLSDSDSEDENEDDSKTPQKETNKNKKLPPPYDPFNKKPAIEEPKDPKDLQEIFHNMRSGDGLLNHAVKMFDALSKDGLTHEALELFGQIKDKGQMPDVVAHTAIIESYTNAGQPKEALKVYMRMLASGVSPNAYTYTVLIKGLASDSKFLGDAKKYVLEMMEKGMKPNAVTYTAVFEGLARDDKAEEATEFLEQMKTKGFVADEKAVREVLRSKRGPIFRTVLSILFGRMRTNADFSDLNDSNSISKESASLIQNLAANHTSSYWLIHSFKVIPIVF	402

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele13g2179	402	MobiDBLite	consensus disorder prediction	137	151	-	-
	Lele13g2179	402	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	222	256	IPR002885	-
	Lele13g2179	402	TIGRFAM	PPR: pentatricopeptide repeat domain	259	294	IPR002885	-
	Lele13g2179	402	TIGRFAM	PPR: pentatricopeptide repeat domain	295	329	IPR002885	-
	Lele13g2179	402	TIGRFAM	PPR: pentatricopeptide repeat domain	224	258	IPR002885	-
	Lele13g2179	402	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	257	292	IPR002885	-
	Lele13g2179	402	Gene3D	Tetratricopeptide repeat domain	164	272	IPR011990	GO:0005515
	Lele13g2179	402	Gene3D	Tetratricopeptide repeat domain	273	341	IPR011990	GO:0005515
	Lele13g2179	402	Pfam	PPR repeat	288	321	IPR002885	-
	Lele13g2179	402	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	293	327	IPR002885	-
	Lele13g2179	402	PANTHER	PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL	194	329	-	-
	Lele13g2179	402	Coils	Coil	13	33	-	-
	Lele13g2179	402	Pfam	PPR repeat	194	218	IPR002885	-
	Lele13g2179	402	MobiDBLite	consensus disorder prediction	125	169	-	-
	Lele13g2179	402	Pfam	PPR repeat family	221	269	IPR002885	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele13g2179	Lele-ChrLele13	28365227	28367177	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele13g2179	116	354	Organic Solute Cotransporters	AT5G03560	68.619	4.83e-110	325

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele13g2179	13	28365227	28367177	Lele05g0286	05	1605925	1606784	CCT
	Lele13g2179	13	28365227	28367177	Lele06g0104	06	636936	637712	CCT
	Lele13g2179	13	28365227	28367177	Lele07g0303	07	1663604	1664402	CCT
	Lele13g2179	13	28365227	28367177	Lele08g0105	08	621733	622509	CCT
	Lele13g2179	13	28365227	28367177	Lele15g0234	15	1315247	1316823	hybridization
	Lele13g2179	13	28365227	28367177	Lele16g0238	16	1329187	1330234	hybridization