Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g2170 ATGGCAATGAAGCTGATTTTGATAGTCATTGGTTTTGCTTTCTTCATTTCTGGGGTTTTCTCCATTGGATCTGAGACACATTCTGCATTTTCTTACTTAGAGAATGATTTCGTCGCAGAAAAAGCTTCTCCCTCGCCCCAACCTCTCATGGTCGCCCTCACTCTCATTCAAGGAGCTGCTTCTAAGGGAGCTGTCTGTTTGGATGGAACACTGCCTGGTTACCACTTGCATCGTGGGTTCGGATCTGGGGCTAATAGTTGGCTCATTCAACTAGAGGGTGGAGGGTGGTGTAATACCATCAGGAGTTGTGTTTTTAGAAAAACTACTCGTCGTGGTTCCTCAAATCACATGGAAAAGCAAATACCATTCACGGGAATTTTGAGCAATAAAGCTGAAGAAAATCCTGATTTCTTCAACTGGAACAGAGTCAAATTACGGTATTGTGATGGAGCTTCATTCAGTGGGGACGGTGAGGACACGAGTGCACAACTTCAATTCAGAGGACAAAAAATATGGCTGGCTGCTATGGAGGAGTTAATGTCCAAGGGAATGCAGAATGCGAACCAGGCCCTTCTTTCTGGATGCTCTGCTGGTGGCCTGGCATCCATTATACATTGTGACCAATTCCGGGTCTTGTTTCCTAAATCTGTCAGAGTGAAATGTTTGAGTGATGCAGGGTTTTTTCTTGATGCAATTGATGTATCTGGAGGACACACATTGAGGAATCTATATGGAGGTGTTGTTAAATTACAGGAAGTACAAAAAAATCTGCCAGCAAGTTGTCTCAACAAACTGGATCCAACTTCGTGCTTCTTTCCTCAGAATTTGATAAACCATGTTCAGACGCCTTTGTTTTTACTCAATGCGGCCTATGATGCATGGCAGCTCCAAGCCAGTTTAGCACCGCCTTCTGCTGACCCCCATGGCTCTTGGAATAACTGCAAATCAAACCACGCGAACTGTAATTCATCTCAAGTTCAGTTCCTCCAAGACTTCAGAAATCAAATGCTTAATGCTTTGAATGGTTTCTCACTGTCATCTCAAACTGGATTATACATAAATTCTTGTTTTGCTCATTGCCAATCTGAGAGACAGGACACTTGGTTTGCTGATGACTCTCCCTTGATTAAGAACAAGCCAATTGCAATAGCTGTTGGAGACTGGTATTTTGATCGACAAGTCGTCAAAGCTATTGACTGTGCATACCCCTGTGACAAGACCTGCCATAATCTGGTCTTCAAGTGA 1245 0.4345 MAMKLILIVIGFAFFISGVFSIGSETHSAFSYLENDFVAEKASPSPQPLMVALTLIQGAASKGAVCLDGTLPGYHLHRGFGSGANSWLIQLEGGGWCNTIRSCVFRKTTRRGSSNHMEKQIPFTGILSNKAEENPDFFNWNRVKLRYCDGASFSGDGEDTSAQLQFRGQKIWLAAMEELMSKGMQNANQALLSGCSAGGLASIIHCDQFRVLFPKSVRVKCLSDAGFFLDAIDVSGGHTLRNLYGGVVKLQEVQKNLPASCLNKLDPTSCFFPQNLINHVQTPLFLLNAAYDAWQLQASLAPPSADPHGSWNNCKSNHANCNSSQVQFLQDFRNQMLNALNGFSLSSQTGLYINSCFAHCQSERQDTWFADDSPLIKNKPIAIAVGDWYFDRQVVKAIDCAYPCDKTCHNLVFK 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g2170 414 Pfam Pectinacetylesterase 47 394 IPR004963 GO:0016787
Lele13g2170 414 PANTHER NOTUM-RELATED 49 410 IPR004963 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g2170 Lele-ChrLele13 28335414 28338924 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g2170 34 414 Carbohydrate Esterase AT1G57590 72.178 0.0 606
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele06g0104 06 636936 637712 Lele13g2170 13 28335414 28338924 CCT
Lele07g0303 07 1663604 1664402 Lele13g2170 13 28335414 28338924 CCT
Lele08g0105 08 621733 622509 Lele13g2170 13 28335414 28338924 CCT
Lele05g0285 05 1601042 1603837 Lele13g2170 13 28335414 28338924 CCT
Lele13g2170 13 28335414 28338924 Lele15g0241 15 1339803 1350628 hybridization
Lele13g2170 13 28335414 28338924 Lele16g0250 16 1384956 1388476 hybridization