Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g2165 ATGAGAAGGTTCAGAGGGCGAGGTGGTGGTGGTGGCGGTGGCGGCCTTGCGGTTGCGGCGCTGAAAATGAAGTATGCCGCTAATAAAACTTTAGAAAAGAGGGCGACCTCATCTGCACGAGTGTTCATTTTCAACAGAGTGTCTTCTTTGGTTTTGAAAGCAACTTTGTCTTGTTGCTTTTTGGAACGTCGTCGCAATTGCTTCCAGAAAAGCGAATGTGGAATGGGTGAAATGCTGCGTCCAAACCCGAGATTTGTAGGAAGGTGTTCAAGAGAAGATGCGGTTGAGAAAGCAAGGTCGTTGCTGTTACGGCTAATCGACGACGACGGAGAACTAGAGTTTGGTCCGAATCTTGAAAGTGGAAACATAGGAAAGCAAGCAGAGCGTAACCCGCATCCTCCTCTTTCTCCAATACCCCGAGTAGTCGTGTTATTCAAGAAGGCAGATCAACACCAAGAACTTTTTAAGCTATATATTCTCCTAGCTCAACGCCAAGAAGGGATCAGAAGGCAAGTGATGTTAGCAGTCCTGCATCAACTGAGTGCAAGATTTTCTACGGGAGCAATGCGTAATGACAGGATTTCGAAAACTTATGAGCCTGGCTGTAACAAAATAAGTTATCGGAAAATTGAGGCGGTCCACTGGTCCCAGTTTAGTCCAACCCCATTTCTTTGAAGCATACTGAGTCAATCCGCACGGGAATCCCAGGCAGCTCCTCCCATCTTGCTTCAACGTAGGTTACTGCACGGCAATGATTTTGTTGAGCTGATTTGGCAAAATGGCCAAATTCTGGTGCAAGGAGGGTCATCGAGTAGAACACTGAAGAGGCCTTCTTGCTCTAGTTATTCGATAAAACCCTCCAATGAAGCTTACGACGAAGATCACTGCATCGCAAAACGAGCAAGGTTAAACACTTTATGCTCGCTTTTGGACTCCACCCATCAAAATCCCCGACAAACCCATGACCCATGTTCCTACCCGTTTGATTTGAAATGCAACGAAAGGAATAGTTTTAATAATAAGCCTGGGGATGGATTTTTCAATTTAAGAGAAGAAAGAGAATCTAATTCCAGGCCCACTGGGGGGAATGCTCAGTTATGCTCAACTTCCTTACAGACCCAGAAGCATGACTTGGGATCTGGTCTAAGAGTTGAAAAGATCAATTTCTCCAACTTCCTGAGACCTGCATTGTTTTTCAAATCTACTTATCAGGGAAACAGTGCAAGTCGGCTCCCAAACAGTGGCGTTTCAGCTTCAGCTAGAGTGGAGGACATCAAAGCAACTGATGGTGGCAGTAGCAGAGCTGCTAAACATTCCTATTCCTTTGTGATTGACTGGGCGGCTAAGGGATCACAGAGTCTCAACGGAGTTCATCCTGGCCAAACAGCTTTTACTTCTAATAAAGCAAACACAACAACACCCTTTGATGGAAAAAAGGATCAGGAAACACTCCCTGATGAGCAATCCGAAGCTGTTGGATACGATAGGGCCCTCAAGAGTCAGGGATCACATGGTCAATATCATCATCAAACACACAGTATAAAAGGAAAAACACCTGCTGAGTTTTCTAGTGCACCCTTGGTAGCATCTTCTTCTTTGTGCTCGCTTGGAGCCTCGAATGACCCTACTCTTCGTAGTAGGGAACACGAGGACACCGACGACTCAACCTATAAAAGTGATGATGATGAAGAAACAGAAGATACGACGACAAAGGAAACGCCGGCTCAAGATGGTTCAAGAGGCAAGAGAATCAGGAACACCCATATGCATAATTTATCGGAGAGGAAGCGACGACATAAGATTAACAAGAAGATGAGTACATTAAAACGGCTAATACCTAATTGCAACAAGGTATTGTCAATGGGAAGTGGGTTTTGTATGCCTCTAATGATGTCGCAGTTAGGCTTAGGCATGCCTTGCGGGCTTCCTCCTCCTCAGTTTCAAATGCTTCCTCCTGGTTTCCCCAATCACGTGCTTCCCAATATTCAATTCCCAATGTGTCAACAATCTCCTTTCATTTCCATGCCTCCCAAGCCTATCCAACCCTACCTCTCTTCCCACCAGCTTCTTTCTGCAGCTATGCCTATGCCCAAAGTTACTCAGTCTCTCAGAGTTTCCAGACTCGATTGGCCAGTGTGA 2139 0.4563 MRRFRGRGGGGGGGGLAVAALKMKYAANKTLEKRATSSARVFIFNRVSSLVLKATLSCCFLERRRNCFQKSECGMGEMLRPNPRFVGRCSREDAVEKARSLLLRLIDDDGELEFGPNLESGNIGKQAERNPHPPLSPIPRVVVLFKKADQHQELFKLYILLAQRQEGIRRQVMLAVLHQLSARFSTGAMRNDRISKTYEPGCNKISYRKIEAVHWSQFSPTPFLXSILSQSARESQAAPPILLQRRLLHGNDFVELIWQNGQILVQGGSSSRTLKRPSCSSYSIKPSNEAYDEDHCIAKRARLNTLCSLLDSTHQNPRQTHDPCSYPFDLKCNERNSFNNKPGDGFFNLREERESNSRPTGGNAQLCSTSLQTQKHDLGSGLRVEKINFSNFLRPALFFKSTYQGNSASRLPNSGVSASARVEDIKATDGGSSRAAKHSYSFVIDWAAKGSQSLNGVHPGQTAFTSNKANTTTPFDGKKDQETLPDEQSEAVGYDRALKSQGSHGQYHHQTHSIKGKTPAEFSSAPLVASSSLCSLGASNDPTLRSREHEDTDDSTYKSDDDEETEDTTTKETPAQDGSRGKRIRNTHMHNLSERKRRHKINKKMSTLKRLIPNCNKVLSMGSGFCMPLMMSQLGLGMPCGLPPPQFQMLPPGFPNHVLPNIQFPMCQQSPFISMPPKPIQPYLSSHQLLSAAMPMPKVTQSLRVSRLDWPV 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g2165 712 Pfam Helix-loop-helix DNA-binding domain 589 613 IPR011598 GO:0046983
Lele13g2165 712 MobiDBLite consensus disorder prediction 455 478 - -
Lele13g2165 712 Gene3D - 576 623 IPR036638 GO:0046983
Lele13g2165 712 MobiDBLite consensus disorder prediction 455 592 - -
Lele13g2165 712 MobiDBLite consensus disorder prediction 569 588 - -
Lele13g2165 712 MobiDBLite consensus disorder prediction 343 366 - -
Lele13g2165 712 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 585 635 IPR011598 GO:0046983
Lele13g2165 712 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 586 616 IPR036638 GO:0046983
Lele13g2165 712 PANTHER TRANSCRIPTION FACTOR PIF3 240 618 IPR044273 GO:0003700|GO:0006355
Lele13g2165 712 MobiDBLite consensus disorder prediction 503 542 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g2165 Lele-ChrLele13 28296250 28309798 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g2165 537 654 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 37.600 8.93e-14 72.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele13g2165 HLH 4.1e-07 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g2165 13 28296250 28309798 Lele15g0245 15 1375428 1380462 hybridization
Lele13g2165 13 28296250 28309798 Lele16g0254 16 1413261 1415670 hybridization