Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g2161 ATGGGTGAGAATGGCTTGGATGGCGCAGTCGAGCATGATAAGGCAACCACATCACAGAATCACGCAGGAACCAGAACAAACGAGGAAAACAGAGAGATGGCTAAGCAAAAAGGAAAAGCCGAGTCAGTTCCATTTCACAGGATGTTCTCATTTGCGGATTCCACTGATACTCTGTTAATGGTCGCCGGCAGCATTGGGGCCATTGGAAATGGTCTGGGTCTGCCTCTCATGGCGTTACTGATGGGCGAAATGATCAATGCTTTTGGAAGTAACCAGCGAAGCACGCACGTCGCAGCCCAAGTTTCCAAGGTTTCTTTGAAATTTGCGTACTTGGCGGTAGGAATGGGTGTGGCAGCAAGTCTTCAGGTGTCTTGCTGGATGGTCACGGGGGAAAGGCAGGCCGCGCGAATAAGGGGATTGTATCTGAAAACTATACTGAGACAAGACGTTACTTTCTTCGATAAGGAAACAAATACCGGAGAGGTGGTCGGGAGAATGTCCGGTGATACTGTTCTCATACAGGACGCCATGGGAGAGAAGGTTGGCAAATTTCAGCAACTAGTTTCAACATTCCTCGGCGGCTTCGTGGTTGCATTTATTAAAGGATGGCTTCTTGCCCTCGTCATGATGGCCAGTCTTCCATTGCTCGCGGTGGCCGGTGCTGCCATGGCCTTCATCATAGGAAGGACGGCTTCCCGTGGTCAGACAGCTTATGCAAAAGCTGCAAACATCGTTGAACAAACTCTCGGCTCCATTAGAACAGTTGCATCCTTCACAGGTGAAAAGCAAGCGGTGTCTAATTACAGCAAATTTCTGGTGGATGCTTACAAATCAGGAGTCCACGAAGGTTTTGCTGTCGGCCTGGGATTCGGCATGGTTATGTTTGTCTTCTTCTGTGGTTATGCTTTGGCTGTATGGTTTGGCGCAAAGATGATACTGGAAAGAGGATACAACGGCGGTACGGTGATCAATGTGATTGTCGCTATATTAACCGCTTCCATGTCTCTTGGGCAGGCCACCCCTTGCTTGAGTGCTTTTGCGGCGGGTCAAGCTGCAGCTTATAAGATGTTCGAGACAATAGAGCGAAAGCCGGAAATAGACGCTTATGATCCAAACGGTAAAACATTAGAGGACATTAATGGCGACATAGAGTTGAAGGATGTTTACTTTAGTTATCCGACTAGACCCGAGGAGCTAATATTCAACGGGTTCTCTCTTCATATACCAAGCGGCACCACTGCTGCATTGGTCGGAGAGAGTGGAAGTGGCAAGTCAACAGTTATTAGCTTAATAGAAAGATTCTATGATCCACGCACAGGTGAAGTTCTTATTGATGGCGTCAACTTGAAACAACTTCAGCTCAGATGGATTAGAGGTAAAATCGGCCTCGTCAGCCAGGAGCCCGTGTTGTTCGCATCTAGCATCAAGGATAACATCTTATATGGAAAGGCGGGAGCAACAATTGAAGAAGTCAGAGCTGCAGCTGAACTTGCAAATGCTGCTAAGTTCGTTGACAAATTGCCACAGATGGTTGAAAGAGGAACGCATTCGGAGTTGCTCAAGGATCCGGAGGGAGCTTACTCTCAGCTTATACGCTTGCAAGAAGTAAATAAAGAGTCAGAGGAACCTTCAGAGCGTCAAAACAAAAATGAAATTTCCCTAGAATCATTCAGACAATCGAGCCAAAGGAGGTCACTCCGAAGATCCATAAGTGAAGGATCATCTGTCGGCAATAGTAGCAGGCACTCATTTTCAGTACCATTTGGCATGCCCACTGTAGTTAACGTCCCTGAACCTGAACTTGAAAAATTAGACGCGAGAGAAGAATTGCCAGATGTTCCAATTCTTCGCCTCGCTTCCCTCAACAAGCCTGAAATTCCAGTGCTTCTGCTCGGATGTGTGGCTGCCGTAGTAGATGGTGCAATACTTCCGGTGTTTGGTTTGTTGGTTTCCTCTGTTATCAAAACATTCTACGAGCCACCTCATGAGATGAAAAAGGATTCCAAGTTTTGGGCATTTATCTTTTTGGCCCTTGGCATTGCATCTCTGGTCGCAATTCCATCCCGAGGATACTTATTTTCCGTAGCTGGCTGTAAGTTAATCCAACGCATCAGAATGATGTGTTTTGAGAAGGTTGTAAACATGGAGGTTGGTTGGTTTGACGATCCAGAGCACTCAAGTGGAGTAATAGGTGCGAGGCTCTCGGCAGATGCTTCGACGGTGCGAGCTCTTGTCGGTGATGCGCTAGGTCTTCTGATTCAAAATATAGCATCCGTGTTGACTGGTTTAGTTATTGCTTTCGTTGCGAGCTGGGAGTTAGCTTTAGTTATTCTGGTACTCATTCCCCTGATTGGGGTGAACGGATATGTTCAAATGAAATTCATGAAGGGTTTTAGTGCAGATGCAAAGATGATGTACGAAGAAGCGAGCCAAGTAGCTAATGATGCTGTTGGAAGCATCAGAACAGTAGCTTCTTTCTGTGCGGAAGAGAAGGTAATGGAACTGTATAGGAAGAAATGCGAAGGCCCCATGAAATCTGGGATACGGCTAGGTTTGATCAGTGGAACGGGATTCGGGATTTCGTATTTCTTACTTTTTAGCGTCTATGCAGCAAGTTTCTATGCCGGAGCTAGACTTGTGGATGCCGGAAGAACTAACTTCTCCGACGTTTTTCGGGTTTTCTTTGCTCTGACAATGGCGGCAATGGCAGTTTCCCAGACGAGCTCCATGGCTCCAGATTCCAGCAAAGCCAAGTCAGCCACTTCTTCCATATTTGGACTCATTGACAGGAAGTCCAAGATAGACTCCAGCGACGGGTCGGGTGCCACGTTGGATAACGTGAAGGGAGAAATTGAGCTTCGTCATGTCAGCTTCAACTATCCATCGAGACCAGACATACAAATTTTCCGAGACCTCAGTTTGGCTATTCATTCGGGCAAGATAGAAAATGCCTCTTCTGTTTTAGGATAA 2970 0.4673 MGENGLDGAVEHDKATTSQNHAGTRTNEENREMAKQKGKAESVPFHRMFSFADSTDTLLMVAGSIGAIGNGLGLPLMALLMGEMINAFGSNQRSTHVAAQVSKVSLKFAYLAVGMGVAASLQVSCWMVTGERQAARIRGLYLKTILRQDVTFFDKETNTGEVVGRMSGDTVLIQDAMGEKVGKFQQLVSTFLGGFVVAFIKGWLLALVMMASLPLLAVAGAAMAFIIGRTASRGQTAYAKAANIVEQTLGSIRTVASFTGEKQAVSNYSKFLVDAYKSGVHEGFAVGLGFGMVMFVFFCGYALAVWFGAKMILERGYNGGTVINVIVAILTASMSLGQATPCLSAFAAGQAAAYKMFETIERKPEIDAYDPNGKTLEDINGDIELKDVYFSYPTRPEELIFNGFSLHIPSGTTAALVGESGSGKSTVISLIERFYDPRTGEVLIDGVNLKQLQLRWIRGKIGLVSQEPVLFASSIKDNILYGKAGATIEEVRAAAELANAAKFVDKLPQMVERGTHSELLKDPEGAYSQLIRLQEVNKESEEPSERQNKNEISLESFRQSSQRRSLRRSISEGSSVGNSSRHSFSVPFGMPTVVNVPEPELEKLDAREELPDVPILRLASLNKPEIPVLLLGCVAAVVDGAILPVFGLLVSSVIKTFYEPPHEMKKDSKFWAFIFLALGIASLVAIPSRGYLFSVAGCKLIQRIRMMCFEKVVNMEVGWFDDPEHSSGVIGARLSADASTVRALVGDALGLLIQNIASVLTGLVIAFVASWELALVILVLIPLIGVNGYVQMKFMKGFSADAKMMYEEASQVANDAVGSIRTVASFCAEEKVMELYRKKCEGPMKSGIRLGLISGTGFGISYFLLFSVYAASFYAGARLVDAGRTNFSDVFRVFFALTMAAMAVSQTSSMAPDSSKAKSATSSIFGLIDRKSKIDSSDGSGATLDNVKGEIELRHVSFNYPSRPDIQIFRDLSLAIHSGKIENASSVLG 989
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g2161 989 MobiDBLite consensus disorder prediction 1 40 - -
Lele13g2161 989 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 383 613 IPR003439 GO:0005524
Lele13g2161 989 Pfam ABC transporter 402 504 IPR003439 GO:0005524
Lele13g2161 989 MobiDBLite consensus disorder prediction 553 583 - -
Lele13g2161 989 SUPERFAMILY ABC transporter transmembrane region 46 367 IPR036640 GO:0005524|GO:0016020
Lele13g2161 989 Gene3D - 373 509 IPR027417 -
Lele13g2161 989 Gene3D - 941 980 IPR027417 -
Lele13g2161 989 MobiDBLite consensus disorder prediction 536 583 - -
Lele13g2161 989 FunFam ABC transporter B family member 1 609 917 - -
Lele13g2161 989 SMART AAA_5 410 643 IPR003593 -
Lele13g2161 989 PANTHER ABC TRANSPORTER B FAMILY 22 511 - -
Lele13g2161 989 MobiDBLite consensus disorder prediction 536 552 - -
Lele13g2161 989 FunFam ABC transporter B family member 9 47 380 - -
Lele13g2161 989 Pfam ABC transporter transmembrane region 629 902 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lele13g2161 989 Pfam ABC transporter transmembrane region 64 334 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lele13g2161 989 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 372 511 IPR027417 -
Lele13g2161 989 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 630 916 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lele13g2161 989 MobiDBLite consensus disorder prediction 25 40 - -
Lele13g2161 989 Gene3D ABC transporter type 1, transmembrane domain 47 372 IPR036640 GO:0005524|GO:0016020
Lele13g2161 989 Gene3D ABC transporter type 1, transmembrane domain 609 917 IPR036640 GO:0005524|GO:0016020
Lele13g2161 989 Gene3D ABC transporter type 1, transmembrane domain 918 940 IPR036640 GO:0005524|GO:0016020
Lele13g2161 989 SUPERFAMILY ABC transporter transmembrane region 617 931 IPR036640 GO:0005524|GO:0016020
Lele13g2161 989 CDD ABC_6TM_Pgp_ABCB1_D1_like 60 344 - -
Lele13g2161 989 CDD ABC_6TM_Pgp_ABCB1_D2_like 619 934 - -
Lele13g2161 989 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 61 348 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g2161 Lele-ChrLele13 28265198 28270831 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g2161 512 980 Calmodulin-binding Proteins AT2G36910 35.270 2.93e-80 283