Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g2157 ATGAGTGGAAAAGTTCTCATCTCCGCTGTTTCTCTCATCCTCGTGGTGGGGGTAGCCATCGGCACTGTGGTAGTGGTTCACAATCAGAATGGTGACTCCGATCAACTCTCCGCCCACCAGAATGCGGTGGTGCACATGTGCCAGAACACCGAGGACCCAAAGTTTTGCCAACAAACTCTCAGCCATGTCAATGACTCTGACCCAAAGGCATTCCTAACAGCCATAGTGGAAGCAACCACCAACAGCGTCATCAAGGGCTTGAATATGAGCGACAGGCTCATTGTCGATCATGGCAATGGCGGTAAAGGCGTTAAGATGGCCCTTGATGACTGCAAGGACCTGCTCCAATTCGCCATGGATAGTCTTCAATCATCCACTGAATTGTTGCGCAATGACATGAAAACCGTGACCGGCCAAACCCCTGACTTCAGGAACTGGCTCTCCGCCGTCATCTCCTACCAACAGGCCTGCATGGATGGTTTTGACGACAACAATGACGGAGAGAAACAGATCAAGTCACAGTTGCAAGAGCAAGCATTAGACGGCATCGGAAAGATCACCGGTATAGCCCTGGACATCGTGTCCGATCTGTCCAAGATCCTTGGAAAGTTTGGGTTGCAGTTGGATGTGAAACCTGCTTCCCGCCGCCTTATGGAGGTGGACAGCGAGGGTTATCCTACGTGGTTCTCTGCTTCTGACCGTAAGCTGTTGCAAAAGATGAATAGGGGACATCATTTGAAACCCAACGTCATGGTGGCTAAGGATGGTAGCGGAAACTTCAAGACCGTTGCAGAGGCCATTGCCTCCTATCCCAAAAATGGTGTTGGGCCAAATGGCAGATACGTGATCTTCGTCAAGGCAGGCGTATATCAAGAGTACATCATCGTTCCCAAATCTGCAGTGAATATCCTTATGTATGGTGAGGGCGCCGGTAAAACCGTCATCACCGGAAACAAAAACTTCGTTGATGGGGTCAAGACAATGCAAACAGCTACCTTTGCCAATACTGCAAATGGGTTCATCGCCAAGTACATGACATTTGAGAACAGTGCTGGAGCTGAAAAGCACCAAGCAGTGGCATTGAGGAACCAGGGAGATATGTCGGCTTTCTTCGATTGCGCCATCGTTGGAAACCAAGACACCTTGTACGCTCAAACCAATCGCCAATTCTACAAGAACTGCGACATCTCTGGTACTATTGACTTCATATTTGGGGTGTCACCGACATTGATCCAGAGCTCTAGAATCATTTTAAGGAAGCCACTGGACAACCAATTCAACACAGTGACGGCAGACGGGACCCCCCAAAAGAACATGCCCACCGGAATTGTGATCCAAAACTGCGATATCGTGCCGGAGCCAGCTCTGTTCCCCGTCAGGTTCCAATTGTTGTCTTACTTGGGAAGGCCATGGAAGGCTTACTCAAAGACTGTGGTGATGGAATCCAGAATCGGCGATGTTATCCATCCCGATGGATGGATTCCTTGGGAGGGAAGCATGTACCTCGACACCTTGTACTATGCTGAGTACAACAACGAAGGACCCGGTGCTAGTGTTCAGGGAAGAGTCAGGTGGCCAGGTTACAAGGGCCTCATCAGCAAGGACGAAGCTCTCCAATTCACAGCCGGCCAATTCCTCAGAGGTGGACCCACCTCCGATTCTGCGGTTTGGCTCAAGGCTCTTCGTGTTCCTTATGACATTGGCTTCACCAAGCTGTGA 1719 0.502 MSGKVLISAVSLILVVGVAIGTVVVVHNQNGDSDQLSAHQNAVVHMCQNTEDPKFCQQTLSHVNDSDPKAFLTAIVEATTNSVIKGLNMSDRLIVDHGNGGKGVKMALDDCKDLLQFAMDSLQSSTELLRNDMKTVTGQTPDFRNWLSAVISYQQACMDGFDDNNDGEKQIKSQLQEQALDGIGKITGIALDIVSDLSKILGKFGLQLDVKPASRRLMEVDSEGYPTWFSASDRKLLQKMNRGHHLKPNVMVAKDGSGNFKTVAEAIASYPKNGVGPNGRYVIFVKAGVYQEYIIVPKSAVNILMYGEGAGKTVITGNKNFVDGVKTMQTATFANTANGFIAKYMTFENSAGAEKHQAVALRNQGDMSAFFDCAIVGNQDTLYAQTNRQFYKNCDISGTIDFIFGVSPTLIQSSRIILRKPLDNQFNTVTADGTPQKNMPTGIVIQNCDIVPEPALFPVRFQLLSYLGRPWKAYSKTVVMESRIGDVIHPDGWIPWEGSMYLDTLYYAEYNNEGPGASVQGRVRWPGYKGLISKDEALQFTAGQFLRGGPTSDSAVWLKALRVPYDIGFTKL 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g2157 572 Pfam Pectinesterase 249 548 IPR000070 GO:0030599|GO:0042545
Lele13g2157 572 SMART PMEI_2 38 193 IPR006501 GO:0004857
Lele13g2157 572 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 41 197 IPR035513 -
Lele13g2157 572 TIGRFAM PME_inhib: pectinesterase inhibitor domain 24 193 IPR006501 GO:0004857
Lele13g2157 572 ProSitePatterns Pectinesterase signature 1. 277 296 IPR018040 -
Lele13g2157 572 Pfam Plant invertase/pectin methylesterase inhibitor 42 193 IPR006501 GO:0004857
Lele13g2157 572 Gene3D - 243 569 IPR012334 -
Lele13g2157 572 CDD PMEI-like_3 46 199 - -
Lele13g2157 572 FunFam Pectinesterase 243 569 - -
Lele13g2157 572 SUPERFAMILY Pectin lyase-like 246 554 IPR011050 -
Lele13g2157 572 Gene3D Invertase/pectin methylesterase inhibitor family protein 39 198 IPR035513 -
Lele13g2157 572 PANTHER PECTINESTERASE 18 559 - -
Lele13g2157 572 ProSitePatterns Pectinesterase signature 2. 396 405 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g2157 Lele-ChrLele13 28251841 28253648 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g2157 1 569 Carbohydrate Esterase AT2G47030 38.550 6.57e-133 398