Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g2155 ATGGAGGAGACCTTTCTTTTCACATCTGAATCTGTCAACGAGGGTCACCCCGACAAGTTGTGCGACCAGATCTCTGATGCTGTGCTTGATGCCTGCCTTGAACAGGACCCTGACAGCAAGGTTGCCTGTGAGACATGCACCAAGACCAACATGGTCATGGTCTTTGGAGAGATTACAACCAAGGCCAATGTAGATTATGAGAAGATTGTCCGCAATACATGCCGCAACATTGGATTTGTCTCTGATGATGTGGTTCTTGATGCTGACAAATGCAATGTATTGGTCAACATTGAGCAGCAGAGCCCTGACATTGCCCAGGGCGTGCACGGCACGGCCACTTTACTAAGCGTCCAGAGGAGGTTGGTGCTGGTGATCAGGGTCACATGTTTGGATGGCAAAACGCAAGTAACTGTTGAGTACTACAATGACAACGGTGCTATGTTTCCAGTTCGTGTCCACACTGTCCTTATTTCTACTCAGCATGACGAGACTTCAAGAGGCTCAGGCGCTTTCTCCTACGCACTTCCTCTGCGCAATTTTCGCCGGTTGTGGAGCCAAGATCTTCATCCAGGCCTTCGTCCACTTAGTTTCCAGCTCCCTGATCTCTCAACTCCAGCATATTGCCATTTGATTTTAGAACGAGTCATGAGTTGTTTCAGCTGTTGCGAAGAGGATGAACTTCACAAAGCTTCTGAGACTGGAGGACCATACGTGGTAAAAAACTCAACAGGAAACGATGGAAATTATCATGCTTCTGAAACTGCAAAGCAGGGTGCTCAGACTGTTAAAGTCCAGCCCATTGAAGTTCCTGCCATATCAGCAGATGAATTAAAAGAAATTACAGATAATTTTGGGACAAATTCTCTGATTGGGGAGGGGTCCTATGGAAGAGTATATTATGGCGTTCTTAAAAATGGTCTGGCTGCAGCAATCAAGAAGTTAGATGCTAGTAAACAACCTGATGATGAGTTTTTAGCCCAGGTTTCCATGGTATCAAGGCTGAAGCATGAGAATTTTGTTCAATTACTTGGTTATTGTGTTGATGGAAGTTCCCGCGTTCTTGCTTATGAGTTTGCATCTAATGGATCTCTTCACGACATTTTACATGGCAGAAAAGGTGTTAAAGGAGCCCAACCTGGTCCTGTCTTGTCATGGGCACAGAGAGTAAAGATTGCTGTAGGAGCTGCAAAAGGGCTTGAGTACTTGCATGAGAAGGCTGATCCTCACATTATCCACCGAGATATCAAATCAAGCAATGTACTGATTTTTGATGATGATGTTGCTAAGATTGCAGATTTTGATTTGTCAAATCAGGCTCCTGATATGGCTGCACGTCTTCATTCCACTCGTGTCCTTGGAACCTTTGGTTATCATGCACCAGAATATGCAATGACTGGACAACTGAATGCTAAAAGTGATGTATACAGCTTTGGCGTTGTCCTTCTGGAACTTTTGACTGGAAGGAAGCCTGTTGATCATACACTACCTCGTGGACAGCAGAGCCTGGTTACTTGGGCTACACCAAAACTCAGTGAAGATAAAGTCAGGCAGTGTGTTGATACAAGACTAGGAGGAGATTACCCACCCAAAGCTGTTGCTAAGATGGCTGCTGTTGCAGCGCTATGCGTGCAATATGAAGCTGACTTCCGACCAAACATGAGCATTGTAGTCAAAGCTCTTCAACCTTTGTTGAATGCACGACCTGGACCTGCTGGTGAAACTCCAAATTGA 1731 0.4529 MEETFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRNTCRNIGFVSDDVVLDADKCNVLVNIEQQSPDIAQGVHGTATLLSVQRRLVLVIRVTCLDGKTQVTVEYYNDNGAMFPVRVHTVLISTQHDETSRGSGAFSYALPLRNFRRLWSQDLHPGLRPLSFQLPDLSTPAYCHLILERVMSCFSCCEEDELHKASETGGPYVVKNSTGNDGNYHASETAKQGAQTVKVQPIEVPAISADELKEITDNFGTNSLIGEGSYGRVYYGVLKNGLAAAIKKLDASKQPDDEFLAQVSMVSRLKHENFVQLLGYCVDGSSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLSWAQRVKIAVGAAKGLEYLHEKADPHIIHRDIKSSNVLIFDDDVAKIADFDLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLNAKSDVYSFGVVLLELLTGRKPVDHTLPRGQQSLVTWATPKLSEDKVRQCVDTRLGGDYPPKAVAKMAAVAALCVQYEADFRPNMSIVVKALQPLLNARPGPAGETPN 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g2155 576 ProSitePatterns Protein kinases ATP-binding region signature. 290 313 IPR017441 GO:0005524
Lele13g2155 576 Gene3D Transferase(Phosphotransferase) domain 1 359 568 - -
Lele13g2155 576 SUPERFAMILY S-adenosylmethionine synthetase 4 109 IPR022636 GO:0004478|GO:0006556
Lele13g2155 576 SUPERFAMILY S-adenosylmethionine synthetase 129 165 IPR022636 GO:0004478|GO:0006556
Lele13g2155 576 Pfam Protein tyrosine and serine/threonine kinase 288 560 IPR001245 GO:0004672|GO:0006468
Lele13g2155 576 Gene3D - 12 116 - -
Lele13g2155 576 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 219 568 - -
Lele13g2155 576 Gene3D Phosphorylase Kinase; domain 1 245 358 - -
Lele13g2155 576 SUPERFAMILY Protein kinase-like (PK-like) 263 560 IPR011009 -
Lele13g2155 576 FunFam S-adenosylmethionine synthase 12 120 - -
Lele13g2155 576 ProSitePatterns Serine/Threonine protein kinases active-site signature. 410 422 IPR008271 GO:0004672|GO:0006468
Lele13g2155 576 FunFam pto-interacting protein 1 360 571 - -
Lele13g2155 576 SMART serkin_6 284 564 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele13g2155 576 Pfam S-adenosylmethionine synthetase, central domain 127 164 IPR022629 GO:0004478|GO:0006556
Lele13g2155 576 ProSiteProfiles Protein kinase domain profile. 284 564 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele13g2155 576 FunFam PTI1-like tyrosine-protein kinase 3 248 358 - -
Lele13g2155 576 CDD STKc_IRAK 290 563 - -
Lele13g2155 576 Pfam S-adenosylmethionine synthetase, N-terminal domain 5 102 IPR022628 GO:0004478|GO:0006556
Lele13g2155 576 Gene3D - 117 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g2155 Lele-ChrLele13 28236255 28245063 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g2155 265 561 Receptor kinase-like Gene Family AT4G02010 50.498 1.89e-89 289
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIII Lele13g2155 PK_Tyr_Ser-Thr 1.3e-45 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g2155 13 28236255 28245063 Lele15g0256 15 1446823 1457225 hybridization
Lele13g2155 13 28236255 28245063 Lele16g0267 16 1485172 1486353 hybridization