Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g2151 ATGGTTGCCGAAGCTGACCTTATGCATCCACAGAGCACACCTGTGTTGGATGTTCAGTGTTTTACTAAAGGAGCAAGTACATGTGAGATCGAAGATGCCGCTGCCACCACTCATCCGAGTTTTGACCGAGTTCGCGCTTCTCCATTAGCGTCTGCCGAGTTACTCAGTTCACAAGGAGTGAGATTCCCAACACCCTTGATTTCCTTATCTTTGTTTCTGCTTGTTTTTTCCTTTTTCGATTATATCGAGGGTATCAGCTCAGATGTCAAAATGTCATGGTGCTTGTTTAGATTTGTCCCGGATTACTGTAGGAATGACAACTCTCCCATTAGTTCACGTGTGCTACCATGGGCTTTCCTGGCCTTTGTAGAGGATATTAAAGCTGCAGACGGAATATCAAATGCTGCTCTTGATTCTTCTGTTCTTCAATTTGTTCCCACCATTCGTTCTGGCAGTTTTGCTGACATTGGCCCCCGGAGATTCATGGAAGATGAACATATAAGGATAGATGATCTGTCTTCTCACATGGGATCACCATATACTTTTCCTGAACCAAGTGCCTTCTATGGGGTATTTGATGGTCATGGAGGACCTGAAGCTGCAGCTTATATCCAGAAAAATGTAATGAGATTCTTCTTTGAAGATGTTAGCTTCCCCCAGACATCTGAAGCTGATAATGTTTTTTTACAAGAGGCAGAGAACTCCCTCAAAAAATCATTTCTTTTGGCTGACTCAGCTTTGGCTGATGATTGCAGTGTGAGCAACTCATCAGGGACCACGGCGCTTACTGCCTTGATATTTGGAAGGCTTCTTATGGTGGCCAATGCTGGTGACTGTCGAGCAGTTCTCTGTCTGATTGTTGTGTGCTTGTCTTCTAATTCTACTGATCACAGGGAGCCATCCCCTCCTCGTCAGAGGAAATTGAGGTGCTGCAGCCTTTCCGCGGAGGCGCATTGTTTTGGGGAGCTCATGAATCCAGGAAGCAGCTCACTGCAGATGCCGAAGCGAAGGTTGGAGGGTAAGGTGGCTCTCGTCACCGGGGCTTCCAGTGGGATCGGGGAAGAGACGGTGAGACTATTCGCTGAGAACGGTGCCTTCGTTGTGGCAGCAGACGTTCAAGACGAACTGGGTCTTCAAGTCGCCGCTTCCATAGGATCAGACAGGGTGAGTTACCATCATTGCGATGTCAGAGATGAACAGCAGGTCGAGGGAACAGTAAATTACGCTCTGCAAAAGTATGGAAGCTTGGATATCCTGTTCAGTAACGCCGGAATACTTGGTTCAGTATCTGGAATCCTGGATCTTGATCTGAATGAGTTCGACAACACCATGGCCACAAACGTTCGTGGTGTGGCCGCGACAATCAAACATGCTGCTCGTACTATGGTCGCAAGGAACATCCGAGGATCCATCATTTGCACCGCCAGCGTGGCGGCTTGTGTTGGAGGAACGGGGCCTAATGGGTACACCATATCGAAGCATGCTCTCGTTGGAGTCGTACGGTCCGCATGTAGTGAGCTTGGGGCTTATGGGATCAGAGTAAACTGTGTGTCCCCTTTTGGAGTTGCCACGCCTCTTGCATGTTCGACCTTCAATCTCCAACCTCATCAAGTCGAAGATAATAGCTCTTCCAAGGCTAATCTCAAGGGGATTGTGTTGAAGGCGAGGCATATTGCGGAAGCTGCTTTGTTTCTTGCTTCTGATGATTCTGTTTACATCAGTGGACACAACTTGGTGGTCGATGGGGGCTTCTCTGTGGTTAAACATAGTTTTTCTCCCATCTGA 1785 0.4784 MVAEADLMHPQSTPVLDVQCFTKGASTCEIEDAAATTHPSFDRVRASPLASAELLSSQGVRFPTPLISLSLFLLVFSFFDYIEGISSDVKMSWCLFRFVPDYCRNDNSPISSRVLPWAFLAFVEDIKAADGISNAALDSSVLQFVPTIRSGSFADIGPRRFMEDEHIRIDDLSSHMGSPYTFPEPSAFYGVFDGHGGPEAAAYIQKNVMRFFFEDVSFPQTSEADNVFLQEAENSLKKSFLLADSALADDCSVSNSSGTTALTALIFGRLLMVANAGDCRAVLCLIVVCLSSNSTDHREPSPPRQRKLRCCSLSAEAHCFGELMNPGSSSLQMPKRRLEGKVALVTGASSGIGEETVRLFAENGAFVVAADVQDELGLQVAASIGSDRVSYHHCDVRDEQQVEGTVNYALQKYGSLDILFSNAGILGSVSGILDLDLNEFDNTMATNVRGVAATIKHAARTMVARNIRGSIICTASVAACVGGTGPNGYTISKHALVGVVRSACSELGAYGIRVNCVSPFGVATPLACSTFNLQPHQVEDNSSSKANLKGIVLKARHIAEAALFLASDDSVYISGHNLVVDGGFSVVKHSFSPI 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g2151 594 ProSitePatterns PPM-type phosphatase domain signature. 188 196 IPR000222 GO:0043169
Lele13g2151 594 ProSiteProfiles PPM-type phosphatase domain profile. 149 450 IPR001932 -
Lele13g2151 594 CDD PP2Cc 148 284 IPR001932 -
Lele13g2151 594 Pfam Protein phosphatase 2C 159 285 IPR001932 -
Lele13g2151 594 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 414 425 IPR002347 -
Lele13g2151 594 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 489 508 IPR002347 -
Lele13g2151 594 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 469 477 IPR002347 -
Lele13g2151 594 SUPERFAMILY PP2C-like 143 284 IPR036457 -
Lele13g2151 594 Gene3D - 143 321 IPR036457 -
Lele13g2151 594 PRINTS Glucose/ribitol dehydrogenase family signature 548 568 IPR002347 -
Lele13g2151 594 PRINTS Glucose/ribitol dehydrogenase family signature 414 425 IPR002347 -
Lele13g2151 594 PRINTS Glucose/ribitol dehydrogenase family signature 463 479 IPR002347 -
Lele13g2151 594 PRINTS Glucose/ribitol dehydrogenase family signature 342 359 IPR002347 -
Lele13g2151 594 PRINTS Glucose/ribitol dehydrogenase family signature 489 508 IPR002347 -
Lele13g2151 594 PRINTS Glucose/ribitol dehydrogenase family signature 510 527 IPR002347 -
Lele13g2151 594 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 339 587 IPR036291 -
Lele13g2151 594 Pfam Enoyl-(Acyl carrier protein) reductase 347 585 - -
Lele13g2151 594 FunFam Short-chain dehydrogenase reductase 325 589 - -
Lele13g2151 594 Gene3D - 328 591 - -
Lele13g2151 594 SMART PP2C_4 139 448 IPR001932 -
Lele13g2151 594 PANTHER SHORT-CHAIN DEHYDROGENASE REDUCTASE 334 591 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g2151 Lele-ChrLele13 28215795 28221106 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g2151 144 308 PP2C-type Phosphatase Gene Family AT1G48040 62.048 4.57e-58 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBP Lele13g2151 adh_short_C2 6.4e-63 CL0063
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g2151 13 28215795 28221106 Lele15g0261 15 1475905 1479609 hybridization
Lele13g2151 13 28215795 28221106 Lele16g0274 16 1512218 1514701 hybridization