Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g2150 ATGGCGTCAGGGGGTGTACCTCATGCTCGGTTAACAGATGTAAACGCAAATACAAATGGCATTGATAGGTTGCCTGCCGAGATGAATGACATGAAAATTAGGGACGACAAGGAAATGGAAGCAACTGTTATAGATGGAAACGGGAATGAAGCAGGACATATAATTGTCACTACCATTGGTGGTAAAAATGGCCAGCCAAAGCAGACAATAAGCTACATGGCTGAGCGTGTTATTGGGCATGGATCTTTTGGAGTAGTTTTCCAGGCAAAATGCTTGGAGACGGGTGAAACTGTGGCTATAAAAAAGGTTCTTCAAGACAAGAGGTACAAGAATCGAGAACTGCAAACCATGCGTCTTCTTGACCACCCTAACATAGTATCTTTGAAGCATTGTTTCTTTTCAACAACTGAAAAAGAGGAGCTTTACCTGAACTTGTTATTAGAGTATGTTCCTGAGACTCTCCATCGGGTGACCAGACGCTATAACAAGATGAATCAAAGGATGCCATTGATATACGTCAAACTTTATTTTTACCAGATATGTAGGGCACTTGCTTACATTCACAACAGTATTGGAGTGTGCCACAGGGACATAAAACCTCAAAATCTACTGGTTAATCCTCACACACATCAACTGAAGCTATGTGACTTTGGAAGTGCAAAAGTGTTGGTAAAAGGTGAACCGAACATATCATATATCTGTTCTAGGTACTATAGAGCTCCTGAGCTCATCTTTGGTGCTACTGAGTACACCACTGCCATTGACATCTGGTCTGCTGGTTGCGTACTTGGTGAACTATTGGTTGGTCAGCCTCTCTTCCCTGGCGAGAGTGGAGTAGACCAGATTGTTGAAATTATCAAGGTTTTAGGTACTCCGACAAGGGAAGAAATCAAGTGCATGAATCCTAATTACACCGAGTTCAAATTCCCGCAAATTAAAGCTCATCCTTGGCACAAGGTCTTTCACAAACGCATGCCATCTGATGCTGTGGATCTTGTCTCAAGACTACTGCAGTACTCTCCCAATCTTCGAAGCACAGCTTTGGAGGCTCTTGTTCACCCGTTCTTTGATGAGCTGCGTGACCCAAACACTCGGTTGCCAAACGGGCGTTTCCTCCCCCCACTCTTCAACTTCAAGGCAAATGAGCTCAAGGGAGTGCCTGCTGAGATGATGATGAAGCTTATTCCACCACATGCAAGAAGGGAGTGTGCATTGTTCGGGGCATAA 1227 0.4409 MASGGVPHARLTDVNANTNGIDRLPAEMNDMKIRDDKEMEATVIDGNGNEAGHIIVTTIGGKNGQPKQTISYMAERVIGHGSFGVVFQAKCLETGETVAIKKVLQDKRYKNRELQTMRLLDHPNIVSLKHCFFSTTEKEELYLNLLLEYVPETLHRVTRRYNKMNQRMPLIYVKLYFYQICRALAYIHNSIGVCHRDIKPQNLLVNPHTHQLKLCDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTAIDIWSAGCVLGELLVGQPLFPGESGVDQIVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKVFHKRMPSDAVDLVSRLLQYSPNLRSTALEALVHPFFDELRDPNTRLPNGRFLPPLFNFKANELKGVPAEMMMKLIPPHARRECALFGA 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g2150 408 SUPERFAMILY Protein kinase-like (PK-like) 71 382 IPR011009 -
Lele13g2150 408 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 36 401 - -
Lele13g2150 408 Pfam Protein kinase domain 72 356 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele13g2150 408 FunFam Glycogen synthase kinase-3 beta 56 151 - -
Lele13g2150 408 CDD STKc_GSK3 67 359 IPR039192 -
Lele13g2150 408 Gene3D Transferase(Phosphotransferase) domain 1 152 400 - -
Lele13g2150 408 ProSitePatterns Serine/Threonine protein kinases active-site signature. 193 205 IPR008271 GO:0004672|GO:0006468
Lele13g2150 408 ProSitePatterns Protein kinases ATP-binding region signature. 78 102 IPR017441 GO:0005524
Lele13g2150 408 SMART serkin_6 72 356 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele13g2150 408 Gene3D Phosphorylase Kinase; domain 1 56 151 - -
Lele13g2150 408 MobiDBLite consensus disorder prediction 1 22 - -
Lele13g2150 408 ProSiteProfiles Protein kinase domain profile. 72 356 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele13g2150 408 FunFam Shaggy-related protein kinase kappa 152 400 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g2150 Lele-ChrLele13 28208855 28211340 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g2150 78 363 MAP Kinase Gene Family AT3G45640 35.593 2.10e-55 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Lele13g2150 Pkinase 2.3e-64 CL0016