Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g2144 ATGGGCCTAAGGAAGGGTCCATGGACTGTGGAAGAGGACAACATTCTGGTCAATTACATCGCCATCCACGGCGAAGGTCGCTGGAATTCCGTCGCCAGCTGTGCCGGCACGTACTCTGTTCGTTCTCGCTGCATGATTGCGCCTTCAAAGTTAAGGTGGCGGAACTACTTGCGTCCCGGCGTACGGCGTGGGAATATCACACTGCAGGAACAGATAGTAATTCTTGATCTGCACTCTCGGTGGGGAAATAGGTGGTCGAAAATAGCGCAGCACTTGCCAGGAAGAACAGACAATGAGATTAAGAATTACTGGAGGACGAGGGTGATGAAGCAGGCGAAGCAGCTCAAGTGCGATGTCAACAGCAAGCAGTTCAGGGACACCATGCGTTACGTGTGGATGCCCCGCCTGCTGGAGCGGAAACAGGTGGCCGCATCCGACCACGCCCCGAACTTTCAACCCATCCCCGTCAACCCAAATCACTCCTCCGTCACGCCTCTCGATATGCAGTTCCACCAAGCCCCCCCTACTCCATGGGAGGTTCGTCATGTTTCGGACGGCTCCCCAACCGGGTCGGAAGTTTGCCCGCAGGCCGTGTTGGAGCAGGGAAATAATGCCCTGGGTGGTGGTGGGGAGTGGGCGGAAACAGTGTGGAGCGACGACAGCATTTGGTTTTTGCAGCAACAACTTTTCCTAGATGCGTGA 702 0.557 MGLRKGPWTVEEDNILVNYIAIHGEGRWNSVASCAGTYSVRSRCMIAPSKLRWRNYLRPGVRRGNITLQEQIVILDLHSRWGNRWSKIAQHLPGRTDNEIKNYWRTRVMKQAKQLKCDVNSKQFRDTMRYVWMPRLLERKQVAASDHAPNFQPIPVNPNHSSVTPLDMQFHQAPPTPWEVRHVSDGSPTGSEVCPQAVLEQGNNALGGGGEWAETVWSDDSIWFLQQQLFLDA 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g2144 233 Gene3D - 66 129 - -
Lele13g2144 233 ProSiteProfiles Myb-like domain profile. 1 57 IPR001005 -
Lele13g2144 233 CDD SANT 7 57 IPR001005 -
Lele13g2144 233 Gene3D - 2 63 - -
Lele13g2144 233 SUPERFAMILY Homeodomain-like 2 104 IPR009057 -
Lele13g2144 233 ProSiteProfiles Myb-like domain profile. 58 108 IPR001005 -
Lele13g2144 233 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 3 149 IPR044676 GO:0003700|GO:0006355|GO:0043565
Lele13g2144 233 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 112 IPR017930 -
Lele13g2144 233 SMART sant 4 59 IPR001005 -
Lele13g2144 233 SMART sant 62 110 IPR001005 -
Lele13g2144 233 FunFam MYB transcription factor 67 130 - -
Lele13g2144 233 CDD SANT 67 106 IPR001005 -
Lele13g2144 233 Pfam Myb-like DNA-binding domain 63 106 IPR001005 -
Lele13g2144 233 Pfam Myb-like DNA-binding domain 5 57 IPR001005 -
Lele13g2144 233 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 32 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g2144 Lele-ChrLele13 28164842 28165745 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g2144 3 162 MYB Transcription Factor Family AT1G48000 63.750 2.13e-69 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele13g2144 Myb_DNA-binding 4.2e-09 CL0123