Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g2143 ATGGAACATCAAGTGTTTGGCTATCATAAGATGAATATCAAGTATAGTGGTGGTGAGAGCGCGGGAAGCATGTCAGGTTGTGGGTCATTGGGAAGTGAAGAAGAGATGGGGATAAGGAAAGGGCCGTGGACAGAGGAAGAGGACGCTATTCTGGCTAACTACATATCCCTCAACGGCGAAGGACACTGGAACTCTCTCGCTCGCTCCGCAGGCATGCTCGCTCGTCTGAAGCGAACGGGGAAAAGCTGCAGATTAAGATGGCTGAACTACCTGCGTCCTGATGTCCGGCGTGGCAATATAACCCTCCAAGAGCAGCTCTTAATCCTCGATCTCCACTCCCGATGGGGCAACAGGTGGTCGAAGATAGCGCAAGAGCTGCCTGGGAGAACGGACAACGAGATAAAGAACTATTGGAGGACGCGAGTGGTGAAGCAGGCCAGACAAATGAAATGTGATGTGAATAGCAAACAGTTTAGAGACGCCTTGCGTTTCGTATGGATTCCTCGCATGGTGGAGCGCATCCAAGCCTCGTCGTCTCAAACGGCATCACCCTGCCACTACAACTCAGCTACTTCTCCCTCTGATCGTTCAATAATGGAGGCCAGTGGTGACGATAGAGAAGCCTGCAGCTCTGGTAATCATCGCTTGGAATATTCGCCAGAATTCCAAGCATTTGAAGAGGGCAATGCAGATTTGTGGACCTACGAAAACATATGCTTCTTGCAACAACAGCTTGCGGATGACTCGGGATCCATTTTTTTTTGCTAA 768 0.5013 MEHQVFGYHKMNIKYSGGESAGSMSGCGSLGSEEEMGIRKGPWTEEEDAILANYISLNGEGHWNSLARSAGMLARLKRTGKSCRLRWLNYLRPDVRRGNITLQEQLLILDLHSRWGNRWSKIAQELPGRTDNEIKNYWRTRVVKQARQMKCDVNSKQFRDALRFVWIPRMVERIQASSSQTASPCHYNSATSPSDRSIMEASGDDREACSSGNHRLEYSPEFQAFEEGNADLWTYENICFLQQQLADDSGSIFFC 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g2143 255 CDD SANT 42 91 IPR001005 -
Lele13g2143 255 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 35 91 IPR017930 -
Lele13g2143 255 Gene3D - 101 142 - -
Lele13g2143 255 CDD SANT 101 140 IPR001005 -
Lele13g2143 255 SMART sant 39 93 IPR001005 -
Lele13g2143 255 SMART sant 96 144 IPR001005 -
Lele13g2143 255 Gene3D - 40 96 - -
Lele13g2143 255 FunFam Myb transcription factor 40 96 - -
Lele13g2143 255 SUPERFAMILY Homeodomain-like 36 138 IPR009057 -
Lele13g2143 255 FunFam MYB transcription factor 101 164 - -
Lele13g2143 255 MobiDBLite consensus disorder prediction 182 205 - -
Lele13g2143 255 MobiDBLite consensus disorder prediction 182 198 - -
Lele13g2143 255 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 35 200 IPR044676 GO:0003700|GO:0006355|GO:0043565
Lele13g2143 255 ProSiteProfiles Myb-like domain profile. 92 142 IPR001005 -
Lele13g2143 255 Pfam Myb-like DNA-binding domain 40 91 IPR001005 -
Lele13g2143 255 Pfam Myb-like DNA-binding domain 97 140 IPR001005 -
Lele13g2143 255 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 92 146 IPR017930 -
Lele13g2143 255 ProSiteProfiles Myb-like domain profile. 35 91 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g2143 Lele-ChrLele13 28161742 28162690 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g2143 33 220 MYB Transcription Factor Family AT2G47190 60.106 1.02e-76 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele13g2143 Myb_DNA-binding 2.9e-13 CL0123