Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g2142 ATGCTTGCCAAAACTCGCGTCCAATTTATCCTGCTGCTTCTTTCATCTTTGTGCGGCTCTTGCAAGCCTTCCTCTTGGAACTCACATAAGCGCTCAGATTATGAGGATTGGATTTCTTGGAACCTCCAGAATTACCGGAAGGTGAAGCTTATGAAGACCCAATGGAATGTGAAAGCACCTGATCTGAAGCTGGGGATGGCTGAGAGTAACAGAGTTAATATCACTGTTCGCCAAGACGGTACCGGTGACTTCACCACCATCACACAAGCGCTGGATAGCATTCCACCTCGCAACATCAGAAGAGTCATAGTTTCGATTGCACCGGGCTTTTATAGGGAGAAGATTGGGATACCCAGAAATATGCACTTCATAACATTGTTAGGGGACGCTACAAATCCGCCAACTATTACATGGAACGATACGGCATCGATCATTGGGAGGGATGGGATGCCATTTGGCACATTCCACAGTGCCACCGTTGCTGTGGATGCTAACTATTTTGTTGCCGTCAACATCAAATTTGAGAACATAGCATGGCACGAGGTAGGAAAGGCGGGAGGGCAAGGCGTGGCACTTCGCATCTCAGGGACCAAAGCAGCATTTTACAACTGCAGCTTCTATGGGGATCAAGACACGCTCTACGACCACAGAGGACTTCACTACTTCAACAATTGCTTCGTTCAAGGCTCCGTTGATTTTATCTTCGGCTCCGGCAGATCCCTTTACGAGAACTGCTATCTAAAGTCAATAGCGAAGAAGGCGGTGTCGATCACGGCTCAAAAGCGCACGAATGCGTCGTTAGAGAGCGGGTTTTCGTTCAAGAATTGCGTGATAACGGGGAGTGGACAAATTTATCTGGGAAGAGCCTGGGGTGATTATTCCAGGGTTGTTTTCTCGTACACCTTCATGGACAAGATTGTTGTGCCCCAGGGCTGGAGTGACTGGGGTGACCAAAAGCGCGACTCGAGAGTGTATTATGGAGAATACAAATGCAGTGGGCCTGGGGCTAACTTGACTGCAAGAGTGGCGTGGGCTCACATACTCACCGACCAAGAGGCTCAGCCCTTTCTCGGTGCTCATTACATTGAAGGCGACACTTGGCTCTTTCCCCTCACCGTTTGA 1122 0.4911 MLAKTRVQFILLLLSSLCGSCKPSSWNSHKRSDYEDWISWNLQNYRKVKLMKTQWNVKAPDLKLGMAESNRVNITVRQDGTGDFTTITQALDSIPPRNIRRVIVSIAPGFYREKIGIPRNMHFITLLGDATNPPTITWNDTASIIGRDGMPFGTFHSATVAVDANYFVAVNIKFENIAWHEVGKAGGQGVALRISGTKAAFYNCSFYGDQDTLYDHRGLHYFNNCFVQGSVDFIFGSGRSLYENCYLKSIAKKAVSITAQKRTNASLESGFSFKNCVITGSGQIYLGRAWGDYSRVVFSYTFMDKIVVPQGWSDWGDQKRDSRVYYGEYKCSGPGANLTARVAWAHILTDQEAQPFLGAHYIEGDTWLFPLTV 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g2142 373 ProSitePatterns Pectinesterase signature 2. 227 236 IPR033131 -
Lele13g2142 373 FunFam Pectinesterase 69 370 - -
Lele13g2142 373 Gene3D - 68 372 IPR012334 -
Lele13g2142 373 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 67 368 - -
Lele13g2142 373 Pfam Pectinesterase 73 365 IPR000070 GO:0030599|GO:0042545
Lele13g2142 373 SUPERFAMILY Pectin lyase-like 72 371 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g2142 Lele-ChrLele13 28157042 28158677 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g2142 74 370 Carbohydrate Esterase AT5G47500 45.151 4.08e-90 273