Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g2138 ATGACCCTCGTACGGGAAATAAACGTGCTTCCGCACTCTCAGCTAATACTTAATAAATATCAGCTTGGACTTTCGAACTTTACAAAGCTGGAGAATCTCAATAACCACCCGGATCAAAGAGTCCCCGGAAACGGCCTCCCCCCTCCCCCTCCCGGTCACCCAATGCTCCCTCATATCCATGAACCGTTTTTCAGCCACTGCACCTTTCAACAGCCGAACGGCCACGATCCTCACATCCCCGGTAACTTCACTTACCCCCATCCCCATCCCCATCCCCATCCCCATGTCCCTGTCCCTCCCCCTGCCAATGGTTTTGCTAACCATAATCAACCTTATAACCACTTTAATCCCATGAATGGCGAGCCAAACAACTCGTTCAGTGCTGGAGGACCTCCCCCTACCAATGGCAACTCTGGATATGGTTTTAACCATTCCTTGCCGCGTCCGGGGCGAAAACGAGGTTGGCATCTCTCTACCCAAGGAACTCCTCCAGATCAAGTTGACGGTGCTTATAATGTGAAACTTTACATTGCTCCAGTTCCAAGAACATCGACAGAAAATGATATCCGCCTTGTGTTTGAAGAACATGGAACTATTGTTGAAGTCGTTCTTTTGAGGGATAAGAAAACAGGCGAAAGACAAGGAAGTTGTTTTGTAAAATTTGCAATGTTAGATGAAGCTGAGAGGGCTATCAAAGCCTTAAGCAATCGATATACTTTTCCTGGGGAGTCATCGCCCATTGTTGTCAGATTTGCGGACCGAGAAAAAGAGCGTCTTGAGGTGGTGGACAAAGTGTTTGTTGGTCACATCAACAAAGAAGCTTCAAAAAAGGAAATTGAAGAAGTATTTTCTCCTTATGGACATGTGGAGGACATCTTCATTGCACAATCTCGCGGATACTGTTTTGTCAAATTTTCAAACAAAGATATGGCTTTGGCAGCAATTAAAGGGCTGAACAATGTATTCACAATGAGGGGCTGTGATCATCCATTAATTGTTCGTTTTGCGGAACCTAAGAAACCCAAGACTGGGGAACCCAGGGTCAACCATATGCCTGGGGGTGCATTTGGTCCATGCTCTCAAGAACCAGCAGTCTGGCTGCCACCGAACTTTGGTGATTCCATTGGAGGGAGTAATCTGCCTATGGCCCCACATCATCCCACAATTCCACATCCACAAGTTGCTCCACATATTCAAAACTGGGAACCTGCTAATACTATAGTGCAACAACCATTTCCTTCCAAGCAAGCACACCCACAATTGGCTCCAATGCCCTCCCAGTCCATGCAGGCTCAGAAGTTATCTTCTCAACCAGTTATTACGGAGATGCTGAAGCAGTCACATCCAACAGATTCATCAACTCAAACTATAGAGCAGCAGCTAAATTCACAGCCTTCCCAGGCCGGAGGCAGTCCTTGTGTTGGTGCTGGCAGTACATCACCAGATATTCCAGGAAGTTCGGATGACGAAAGTTTTCCAGATTGTGACTGGAGTGAACATATCTGTCCTGATGGTAATAAGTACTACTATAATTGCGTGACTTTTGAAAGTAGGTGGGAGAAGCCTGAGGAATATGCCTTGTATGAGAACAAACTAAAAGAGGAGGATCGTGGCTATCCAAATTCATAG 1629 0.4622 MTLVREINVLPHSQLILNKYQLGLSNFTKLENLNNHPDQRVPGNGLPPPPPGHPMLPHIHEPFFSHCTFQQPNGHDPHIPGNFTYPHPHPHPHPHVPVPPPANGFANHNQPYNHFNPMNGEPNNSFSAGGPPPTNGNSGYGFNHSLPRPGRKRGWHLSTQGTPPDQVDGAYNVKLYIAPVPRTSTENDIRLVFEEHGTIVEVVLLRDKKTGERQGSCFVKFAMLDEAERAIKALSNRYTFPGESSPIVVRFADREKERLEVVDKVFVGHINKEASKKEIEEVFSPYGHVEDIFIAQSRGYCFVKFSNKDMALAAIKGLNNVFTMRGCDHPLIVRFAEPKKPKTGEPRVNHMPGGAFGPCSQEPAVWLPPNFGDSIGGSNLPMAPHHPTIPHPQVAPHIQNWEPANTIVQQPFPSKQAHPQLAPMPSQSMQAQKLSSQPVITEMLKQSHPTDSSTQTIEQQLNSQPSQAGGSPCVGAGSTSPDIPGSSDDESFPDCDWSEHICPDGNKYYYNCVTFESRWEKPEEYALYENKLKEEDRGYPNS 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g2138 542 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 173 254 IPR000504 GO:0003723
Lele13g2138 542 SUPERFAMILY WW domain 496 528 IPR036020 GO:0005515
Lele13g2138 542 Gene3D - 261 344 IPR012677 -
Lele13g2138 542 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 263 338 IPR000504 GO:0003723
Lele13g2138 542 MobiDBLite consensus disorder prediction 100 156 - -
Lele13g2138 542 Gene3D - 166 260 IPR012677 -
Lele13g2138 542 CDD WW 495 524 IPR001202 GO:0005515
Lele13g2138 542 MobiDBLite consensus disorder prediction 413 492 - -
Lele13g2138 542 Pfam WW domain 496 522 IPR001202 GO:0005515
Lele13g2138 542 Gene3D - 493 536 - -
Lele13g2138 542 SMART ww_5 492 524 IPR001202 GO:0005515
Lele13g2138 542 SUPERFAMILY RNA-binding domain, RBD 156 258 IPR035979 GO:0003676
Lele13g2138 542 SMART rrm1_1 264 334 IPR000504 GO:0003723
Lele13g2138 542 SMART rrm1_1 174 250 IPR000504 GO:0003723
Lele13g2138 542 PANTHER RNA BINDING PROTEIN 108 525 - -
Lele13g2138 542 MobiDBLite consensus disorder prediction 106 142 - -
Lele13g2138 542 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 265 325 IPR000504 GO:0003723
Lele13g2138 542 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 175 242 IPR000504 GO:0003723
Lele13g2138 542 ProSiteProfiles WW/rsp5/WWP domain profile. 497 524 IPR001202 GO:0005515
Lele13g2138 542 MobiDBLite consensus disorder prediction 413 486 - -
Lele13g2138 542 SUPERFAMILY RNA-binding domain, RBD 264 352 IPR035979 GO:0003676
Lele13g2138 542 ProSitePatterns WW/rsp5/WWP domain signature. 497 522 IPR001202 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g2138 Lele-ChrLele13 28118351 28127228 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g2138 175 342 Eukaryotic Initiation Factors Gene Family AT4G34110 24.737 1.47e-10 62.0