Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g2129 ATGCATAAGATTCAACTAGATCCTAGATTGGTGGGTGACTACAAACTTCTCAATTTGACGTGGTATGAGCCTCCACCTGCATCTCAAGCTCCGAAGTCTGTTGCATCACCTATGAAAGCTCCTAGTTACCATAAACCATCAACTTCAACACCAAGTTCTTCAAATAGGAGAGGACATTCAAGTTTGTATGCTATTCTTGGAATTGGTGCTGGCATACTCTTCATTGCCATTATATCTGTACTCGTACTTTGTTTATGCACATTGAGGCCTAAGACCAAAGGGCCATCAATAGATGCTGAGAAGCCAAGGATAGAAGGTGCAGTTTCAGCAGCAGGGTCTTTTCCTCATCCTACCAGCACTAGATTTATTGCTTATGAAGAACTTAAAGAAGCAACAAACAACTTTGAAGCAGCAAGCTTACTTGGAGAAGGTGGGTTCGGTAGAGTTTTTAAAGGCGTCTTAAATGATGGTACGGCCGTAGCAATTAAGAGGCTTACTAATGGAGGGCAACAAGGGGATAAAGAGTTTTTGGTTGAGGTCGAAATGCTTAGTCGGTTGCATCATCGTAACCTTGTAAAATTGGTGGGATACTATAGCAATCGTGACTCATCACAAAATCTATTATGCTATGAGCTTGTTCCAAATGGAAGTTTGGAGGCGTGGCTTCATGGTCCCTTAGGAATAAATTGTCCTTTGGATTGGGATACCAGAATGAAGATCGCACTTGATGCTGCAAGAGGACTTGCCTACTTGCATGAAGACTCACAGCCCTGTGTTATACACAGAGATTTCAAGGCGTCCAATATATTGCTGGAAAACAACTTCCATGCTAAAGTTGCAGATTTTGGTCTTGCTAAGCAGGCACCTGAAGGCAGAGCAAATTACCTGTCTACTCGTGTCATGGGCACATTTGGGTATGTAGCTCCTGAGTATGCCATGACAGGTCACCTACTTGTTAAAAGTGACGTTTATAGCTATGGGGTTGTCTTGCTGGAACTGCTGACTGGAAGGAAACCTGTTGATATGTCACAGCCAGCTGGACAAGAGAACCTGGTTACTTGGGCAAGGCCAATCCTAAGAGATAAAGACCGGTTGGAAGAGCTTGCTGATCCAAGGCTGGGGGGGAAATATCCGAAGGAAGATTTTGTGCGGGTTTGTACTATTGCTGCGGCCTGCGTCGCTCCTGAAGCAAGCCAACGACCCACAATGGGGGAAGTGGTACAGTCACTTAAAATGGTGCAGCGCATGCCTGAACATCAGCATTCCATGGTGGCCTCCTCCAATACAAGGACTAACCTAAGACAGTCCTCTACCACTTTCGAGTCCGATGGGACGTCTTCTATGTTCTCTTCAGGTCCCTACTCTGGTCTAAGTGTCTTCGACAATGACAACGTTTCTAGGACGGCAGTTTTCTCTGAAGATCTTCATGAAGGAAGATGA 1440 0.4493 MHKIQLDPRLVGDYKLLNLTWYEPPPASQAPKSVASPMKAPSYHKPSTSTPSSSNRRGHSSLYAILGIGAGILFIAIISVLVLCLCTLRPKTKGPSIDAEKPRIEGAVSAAGSFPHPTSTRFIAYEELKEATNNFEAASLLGEGGFGRVFKGVLNDGTAVAIKRLTNGGQQGDKEFLVEVEMLSRLHHRNLVKLVGYYSNRDSSQNLLCYELVPNGSLEAWLHGPLGINCPLDWDTRMKIALDAARGLAYLHEDSQPCVIHRDFKASNILLENNFHAKVADFGLAKQAPEGRANYLSTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVLLELLTGRKPVDMSQPAGQENLVTWARPILRDKDRLEELADPRLGGKYPKEDFVRVCTIAAACVAPEASQRPTMGEVVQSLKMVQRMPEHQHSMVASSNTRTNLRQSSTTFESDGTSSMFSSGPYSGLSVFDNDNVSRTAVFSEDLHEGR 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g2129 479 ProSitePatterns Protein kinases ATP-binding region signature. 141 163 IPR017441 GO:0005524
Lele13g2129 479 MobiDBLite consensus disorder prediction 421 447 - -
Lele13g2129 479 ProSiteProfiles Protein kinase domain profile. 135 424 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele13g2129 479 ProSitePatterns Serine/Threonine protein kinases active-site signature. 259 271 IPR008271 GO:0004672|GO:0006468
Lele13g2129 479 MobiDBLite consensus disorder prediction 42 57 - -
Lele13g2129 479 Pfam Protein tyrosine and serine/threonine kinase 138 410 IPR001245 GO:0004672|GO:0006468
Lele13g2129 479 Gene3D Phosphorylase Kinase; domain 1 117 212 - -
Lele13g2129 479 PANTHER OS01G0750732 PROTEIN 3 437 - -
Lele13g2129 479 FunFam Receptor-like serine/threonine-protein kinase ALE2 213 430 - -
Lele13g2129 479 MobiDBLite consensus disorder prediction 27 57 - -
Lele13g2129 479 FunFam Receptor-like serine/threonine-protein kinase ALE2 115 212 - -
Lele13g2129 479 SUPERFAMILY Protein kinase-like (PK-like) 113 413 IPR011009 -
Lele13g2129 479 CDD STKc_IRAK 141 411 - -
Lele13g2129 479 Gene3D Transferase(Phosphotransferase) domain 1 213 437 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g2129 Lele-ChrLele13 28065575 28068867 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g2129 2 479 Receptor kinase-like Gene Family AT4G02010 77.083 0.0 764
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Lele13g2129 Pkinase 7.5e-45 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele07g0354 07 1977083 1977733 Lele13g2129 13 28065575 28068867 CCT
Lele08g0158 08 978361 978996 Lele13g2129 13 28065575 28068867 CCT
Lele13g2129 13 28065575 28068867 Lele05g0343 05 1945669 1952940 CCT
Lele13g2129 13 28065575 28068867 Lele06g0162 06 976751 984770 CCT
Lele13g2129 13 28065575 28068867 Lele07g0361 07 2003319 2010565 CCT
Lele13g2129 13 28065575 28068867 Lele08g0165 08 1007828 1015368 CCT
Lele13g2129 13 28065575 28068867 Lele15g0282 15 1599773 1605223 hybridization