Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g2127 ATGGCTCATACGTGGGTCTCTACCCAGGCATCCTCTCTTAGATCCAACCCTCTTTTTCTTTCGTCGAGCCATAGTTCTTGTTCCGACACTCAGAAGCTTTCTTTCGCCTCTGACCCTTTCAGGTCGAGCGTTTTTCTGGATGAATGCTAGGATGAAGCTTTTATGACTCGCAGGAAATTAAAGAAATTGGTGGGAAATAAAAGGAATACTCAAAGCTCTCCTGTGAAGGCTGCGTACGCTAATGATTTTTGGGCACCTGAGGGGAGTTCACGCCAGGGTATTTGGTCCATAAGGAGCGTTTTCAGAAGAATAATCCGTTGTGGTGGAGCAGTTGATGATGATATGGCTAATATCATAGTCGCTCAGCTTCTTTATCTTGATGCTGTTGATCCTAACAAGGACATTGTCATGTATGTAAATTCTCCTGGAGGATCAGTAACAGCCGGTATGGCGATATTTGATACAATGAGACATATCCGACCTGATGTTTCAACTGTTTGTGTTGGACTAGCAGCTAGCTATTATCAGAGATGCACCATGGTGTTTGAATTCATGATGTTTTCAACAATTGTCATCCCTGTTGATTTATGTTCTGGTTCTCAGATTCATCATATTCCCGGTTCTTCTGAAGACTTGGCCTATCTTTTTAGGGAAATATGGGGGCTTTTCTCCTTAGTGCTGGGACTAAAGATCTCGTTGTCATTTGTTCTCCAAGGAAGAAGCATTCTTCTAACCCCTTATCCCTTTTCTTCCTCTACACGTGAAGGAAAGAGATACAGCTTGCCTAATTCGAGGATAATGATTCATCAACCGCTTGGTGGAGCTCAAGGAGGCCAAACTGACATAGATATTCAGGTAGAGATCCTGTTTTTGTTGCACAGGGTAAATGTACAAGTTGCTTATATAGCCAATATTCAGAATTTGGCCCCGAACTTGCTGATAATTAGTCAACATTCAACAAGACAGGCAAATGAAATGCTGCATCATAAGGCAAACCTGAATGGATATCTGTCGTATCACACTGGCCAACGTCTAGAGAAGATTAACCAGGACACGGACAGGGATTTCTTCATGAGTGCAAAAGAAGCCAAAGAATATGGACTTATCGATGGCGTCATAATGAATCCTCTCAAAGCTCTTCAGCCATTAACTGCTGCTGCAGAGGGCTTGGATCTGGCTACTGTCTGA 1188 0.4293 MAHTWVSTQASSLRSNPLFLSSSHSSCSDTQKLSFASDPFRSSVFLDECXDEAFMTRRKLKKLVGNKRNTQSSPVKAAYANDFWAPEGSSRQGIWSIRSVFRRIIRCGGAVDDDMANIIVAQLLYLDAVDPNKDIVMYVNSPGGSVTAGMAIFDTMRHIRPDVSTVCVGLAASYYQRCTMVFEFMMFSTIVIPVDLCSGSQIHHIPGSSEDLAYLFREIWGLFSLVLGLKISLSFVLQGRSILLTPYPFSSSTREGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQVEILFLLHRVNVQVAYIANIQNLAPNLLIISQHSTRQANEMLHHKANLNGYLSYHTGQRLEKINQDTDRDFFMSAKEAKEYGLIDGVIMNPLKALQPLTAAAEGLDLATV 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g2127 395 PRINTS Clp protease catalytic subunit P signature 165 182 IPR001907 GO:0004176|GO:0004252|GO:0006508
Lele13g2127 395 PRINTS Clp protease catalytic subunit P signature 351 370 IPR001907 GO:0004176|GO:0004252|GO:0006508
Lele13g2127 395 PRINTS Clp protease catalytic subunit P signature 134 154 IPR001907 GO:0004176|GO:0004252|GO:0006508
Lele13g2127 395 Gene3D - 313 376 - -
Lele13g2127 395 Pfam Clp protease 321 375 IPR023562 -
Lele13g2127 395 Pfam Clp protease 252 289 IPR023562 -
Lele13g2127 395 Pfam Clp protease 102 174 IPR023562 -
Lele13g2127 395 ProSitePatterns Endopeptidase Clp histidine active site. 258 271 IPR033135 -
Lele13g2127 395 CDD S14_ClpP_2 103 372 IPR001907 GO:0004176|GO:0004252|GO:0006508
Lele13g2127 395 Gene3D - 89 304 - -
Lele13g2127 395 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 321 381 IPR023562 -
Lele13g2127 395 SUPERFAMILY ClpP/crotonase 102 176 IPR029045 -
Lele13g2127 395 SUPERFAMILY ClpP/crotonase 252 373 IPR029045 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g2127 Lele-ChrLele13 28053595 28056587 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g2127 13 28053595 28056587 Lele05g0347 05 1984574 1990111 CCT
Lele13g2127 13 28053595 28056587 Lele06g0166 06 1011636 1014189 CCT
Lele13g2127 13 28053595 28056587 Lele07g0366 07 2049907 2054404 CCT
Lele13g2127 13 28053595 28056587 Lele15g0284 15 1611901 1614906 hybridization
Lele13g2127 13 28053595 28056587 Lele16g0299 16 1657363 1660486 hybridization