Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g2115 ATGAACGATGCTTGTAAATTGCTTTCTGGAGGCAGAGACAAACAGAGTGACACAAAACAGAGATTTGAAAACCGTAGAGGAAGAGAAACAGAGGGAGCAACTGCAGTGGGATTGCCAAATATGGGAGAGGTTGTTGTGTTTATTGACGATTTGAAATCTATTTCTGGGATTTCTCGATGTAGAATATGTCATGAGGAAGAATTTGAGAGCTCAAAAAGCTTTGAAGCTCCCTGTGCTTGTTCTGGGACCGTTAAGTTTGCTCACAGAGATTGCATACAGAGATGGTGCAATGAGAAGGGGAATACAATTTGTGAAATATGTCTCCAGCAATATGAACCTGGTTACACGGCTCCTCCTCCAAAGAAATTGCAGCTAAATGATGAAGCAATGACCATTCGAGATAGCCTGCAATTTTCAAGAATGGAGGAAGAAGCGCTGAATGCAAGATTAGAGGCAATAGTTGAAAGAGTGGCAATAGAAAGTGATTACTCTGAATGCACATCTGCCGCAGATAGAAGTGCATCTTACTGCCGATTCCTGGCCTTGGCATTTACACTCTTTATGCTTGTGAGACATCTTCTCGCTGTGCTTACGAGTGGAGCAGAAGATTACCCATTTACACTTCTGACTGTTTTAATGCTAAGGGCTGGCGGAATTGTGCTACCCATGTTCATAATTATTAGACTGATTGGAGCGCTTCAAAACATAGTTCAACGTCACTATCAGGATTCTGAAGATGGCGCAGCAATATCTGATGGATATGACAACGAAACCGGGCCACTGCGTGATGTGATTTTTAGACACACATAA 810 0.4235 MNDACKLLSGGRDKQSDTKQRFENRRGRETEGATAVGLPNMGEVVVFIDDLKSISGISRCRICHEEEFESSKSFEAPCACSGTVKFAHRDCIQRWCNEKGNTICEICLQQYEPGYTAPPPKKLQLNDEAMTIRDSLQFSRMEEEALNARLEAIVERVAIESDYSECTSAADRSASYCRFLALAFTLFMLVRHLLAVLTSGAEDYPFTLLTVLMLRAGGIVLPMFIIIRLIGALQNIVQRHYQDSEDGAAISDGYDNETGPLRDVIFRHT 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g2115 269 MobiDBLite consensus disorder prediction 10 30 - -
Lele13g2115 269 ProSiteProfiles Zinc finger RING-CH-type profile. 52 114 IPR011016 GO:0008270
Lele13g2115 269 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 53 240 IPR033275 -
Lele13g2115 269 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 50 117 IPR013083 -
Lele13g2115 269 SMART ringv_2 59 108 IPR011016 GO:0008270
Lele13g2115 269 Pfam RING-variant domain 60 107 IPR011016 GO:0008270
Lele13g2115 269 SUPERFAMILY RING/U-box 59 112 - -
Lele13g2115 269 MobiDBLite consensus disorder prediction 1 32 - -
Lele13g2115 269 CDD RING_CH-C4HC3_MARCH 60 107 - -
Lele13g2115 269 FunFam E3 ubiquitin-protein ligase MARCH4 49 117 - -
Lele13g2115 269 Pfam Protein of unknown function (DUF3675) 113 230 IPR022143 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g2115 Lele-ChrLele13 27979470 27982447 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g2115 60 107 C3H Transcription Factor Family AT5G05830 40.385 2.11e-06 45.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g0347 05 1984574 1990111 Lele13g2115 13 27979470 27982447 CCT
Lele13g2115 13 27979470 27982447 Lele15g0296 15 1680996 1683055 hybridization
Lele13g2115 13 27979470 27982447 Lele16g0308 16 1717791 1721834 hybridization