Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g2106 ATGGGAAGAGCACCGTGCTGTGAGAAAGTCGGCCTGAAAAAGGGAAGATGGAGCGCTCAAGAGGATGAAATCTTGACCAAGTACATTCAGGCCAATGGGGAAGGCTCTTGGAGGGCTTTGCCCAAGAATGCTGGGCTTCTGAGGTGTGGCAAGAGTTGCAGGTTAAGATGGATCAACTACTTGAGATCTGACCTTAAGAGAGGCAACATTTCTGCTCACGAGGAACAGCTCATTATTAAACTACATTCTTCTCTGGGCAACAGGTGGTCCCAGATAGCGAGTCACTTGCCAGGAAGAACAGACAACGAAATTAAAAACTACTGGAATTCTCACTTGAGCAGGAAAATCTACGCCTTCAGGAGGCCGGCTAGTACGGATCAGGCCGAGCAAGAAGCGACGACCATGGATTCAACCACAGCCAATAATAATAAAGCAAACAATATTACAGCAACCAGGCGCAAGCGTGGCAGAACCAGCCGTTGGGCCATGAAGAAGAACAGAAGCAGCAACACCCTGCAAGAGTCTACGGCGGTGGAGAAGACGAATCACAACAGTACTGTAGCAGCAGTTCCGGTACCACCCACGCCGGCGTTAGAGAAGGAAGGCCTGTCCATCACAAGTGACGATGGCATAGACTTTGGGGACTTCATGGTCCTGGAAGGTGACGACAGTAGAGAAGACAAAGCAGAGAGATCAGGAGAAGCGGGTGAGTCAAGTAATAACAATGGAGAAAGAGGCGGAGATGGTTCGTTGAGGCCAGGCGGAGGCAGAGAAACAGAGACGACACAGGAGGATCATGAGCAAGGCATTGATGGTGGTGGGGAGTTATGTCTGAGTGACATGGTGGACACTTGGTTGCTGGAAGACGAAGGGGGTGGGGTTTCAAGTTTAACTGAAGAGAGAGAGAGAACTGCCGAGGTGTCTTGTTTTGATAAGCCAGAGTGTACTAATAATACTACTCAAGACTCCATGCCTTCCCTATTTGAATGCGATAATTACTGGGATAACTGGGAGATTAGTGCGGACGACGACCAGTGGATGAATCATGACGAGTCGCAGACATGGTGGGAGGACAAACAAAACCTCTTGTCTTGGCTCTGGGAAGACGATGATGATTGTCAGATTACTCATGAACAGAATGATCCTGACAAACAAAATCCGAAGCTGCCTCTGATTCTTTCTTGA 1185 0.4886 MGRAPCCEKVGLKKGRWSAQEDEILTKYIQANGEGSWRALPKNAGLLRCGKSCRLRWINYLRSDLKRGNISAHEEQLIIKLHSSLGNRWSQIASHLPGRTDNEIKNYWNSHLSRKIYAFRRPASTDQAEQEATTMDSTTANNNKANNITATRRKRGRTSRWAMKKNRSSNTLQESTAVEKTNHNSTVAAVPVPPTPALEKEGLSITSDDGIDFGDFMVLEGDDSREDKAERSGEAGESSNNNGERGGDGSLRPGGGRETETTQEDHEQGIDGGGELCLSDMVDTWLLEDEGGGVSSLTEERERTAEVSCFDKPECTNNTTQDSMPSLFECDNYWDNWEISADDDQWMNHDESQTWWEDKQNLLSWLWEDDDDCQITHEQNDPDKQNPKLPLILS 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g2106 394 Gene3D - 70 159 - -
Lele13g2106 394 Gene3D - 13 66 - -
Lele13g2106 394 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lele13g2106 394 MobiDBLite consensus disorder prediction 374 394 - -
Lele13g2106 394 MobiDBLite consensus disorder prediction 123 275 - -
Lele13g2106 394 CDD SANT 71 112 IPR001005 -
Lele13g2106 394 FunFam Myb transcription factor 11 67 - -
Lele13g2106 394 SMART sant 66 114 IPR001005 -
Lele13g2106 394 SMART sant 13 63 IPR001005 -
Lele13g2106 394 MobiDBLite consensus disorder prediction 126 149 - -
Lele13g2106 394 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lele13g2106 394 MobiDBLite consensus disorder prediction 218 234 - -
Lele13g2106 394 MobiDBLite consensus disorder prediction 163 189 - -
Lele13g2106 394 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Lele13g2106 394 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lele13g2106 394 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 211 - -
Lele13g2106 394 CDD SANT 16 61 IPR001005 -
Lele13g2106 394 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lele13g2106 394 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lele13g2106 394 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g2106 Lele-ChrLele13 27936143 27938247 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g2106 1 171 MYB Transcription Factor Family AT5G49330 66.474 2.32e-75 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele13g2106 Myb_DNA-binding 1.4e-11 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g2106 13 27936143 27938247 Lele15g0306 15 1725505 1727509 hybridization
Lele13g2106 13 27936143 27938247 Lele16g0316 16 1772729 1774824 hybridization