Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g2091 ATGTGTGGAGGTGCCATCATCGCTGACTTCATTCCTCGCCGCCTTACCCCCTCCGACATCTGGCCTGACACAGTCGGAAACCACAGTGACTTCCACTCGGAGTTTTCTCACTCCGATCCCCTCCAAAACCCTCAACTTTCCACAGTACCTGAGCAGGTTGAGAAGCCCGCCAAGTGGCAGAGGAAGAACCTTTACAGAGGGATTTGGCAGCGTCCGCGGGGTAAATGGGCTGCGGAGATTCGCGATCCTAGGAAAGGGGTTCGTGTTTGGCTCGGCACTTGCAACACTGCGGAAGAAGCTGCCAGGGCCTATGACAGAGAAGCTCGTCAAATCCGCGGCAAGAAAGCCAAGGTAAATTTTCCCAACGAAAACGATGATCGCTCCATTCAAGCACGTCGCAACCCACTGCCTCAACACTCCGACGGTTCCCCGAGAAGTCTGAATCTGGAGTTCAGTTATGATCTGAACCAAACCGGGGTAACTCGTTCTTCCCGCGGGGGAGTGTCAGGTTCAGAGGGTGGTTACTCGACGATGGAGTTGTTGGGGTCGAATCAGAGAAAGGGGGGCGAGGGAGGTAAGACGAAGAAGGTGTGCATAGAAGGGGAGGAAGAAGAGAACCAAGTAGGGGAGCTATCGGAGGAGCTGATGGCGTACGAGAATGATTACATGAAGTTTTATCAGATCCCATACTACGACGGCCAATCTGCGACACGAAACGGCGCTCAGGAGAACGGGCATTTGCAGCAGATACCGGGCGAGAGGAAGATGGTGTCGCTCAAGTTGCAGAAGCGGCTCGCCGCTAGTGTCTTAAAGTGCGGCAGAGGCAAGGTTTGGCTGGATCCCAATGAAGTCAATGAAATCTCCATGGCCAATTCTCGCCAAAACATAAGGAAGTTAGTGAAGGATGGATTCATTATCAGGAAGCCAACTAAAATTCACTCTCGATCTCGTGCTCGGCGTATGAAGGAGGCCAAGAGAAAAGGACGTCACTCTGGATATGGTAAGCGTAAGGGTACAAGGGAGGCAAGGCTTCCCACTAAAATCCTCTGGATGAGGAGGATGCGTGTGCTCAGACGCCTGCTTCGCAAGTACAGGGAATCCAAAAAGATTGACAAGCACATGTACCATGATATGTACATGAAAGTGAAGGGTAATGTTTTCAAGAACAAGAGAGTTTTGATGGAGAGCATACACAAGTCTAAGGCTGAGAAGGCAAGAGAGAAAACGTTGTCTGACCAATTTGAAGCTAAGCGTGCAAAGAACAAGGCAAGCAGGGAAAGGAAAATTGCCCGGAGAGAGGAGCGCTTGGCTCAGGGTCCTGGAGAAAAGGCACCAGTAGCGCCACCTGCTCCTGCTTCCCAGCCTGCCCAAGTATCGAAGAAATCGAAGAAGTAA 1395 0.5161 MCGGAIIADFIPRRLTPSDIWPDTVGNHSDFHSEFSHSDPLQNPQLSTVPEQVEKPAKWQRKNLYRGIWQRPRGKWAAEIRDPRKGVRVWLGTCNTAEEAARAYDREARQIRGKKAKVNFPNENDDRSIQARRNPLPQHSDGSPRSLNLEFSYDLNQTGVTRSSRGGVSGSEGGYSTMELLGSNQRKGGEGGKTKKVCIEGEEEENQVGELSEELMAYENDYMKFYQIPYYDGQSATRNGAQENGHLQQIPGERKMVSLKLQKRLAASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIARREERLAQGPGEKAPVAPPAPASQPAQVSKKSKK 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g2091 464 MobiDBLite consensus disorder prediction 113 132 - -
Lele13g2091 464 SUPERFAMILY Ribosomal protein L19 (L19e) 258 399 IPR035970 GO:0003735|GO:0005840|GO:0006412
Lele13g2091 464 ProSiteProfiles AP2/ERF domain profile. 64 121 IPR001471 GO:0003700|GO:0006355
Lele13g2091 464 FunFam Ribosomal protein L19 256 311 - -
Lele13g2091 464 CDD Ribosomal_L19e_E 259 422 IPR033935 GO:0003735|GO:0022625
Lele13g2091 464 Hamap 50S ribosomal protein L19e [rpl19e]. 258 404 IPR000196 GO:0003735|GO:0005840|GO:0006412
Lele13g2091 464 MobiDBLite consensus disorder prediction 133 148 - -
Lele13g2091 464 FunFam Ribosomal protein L19 312 446 - -
Lele13g2091 464 ProSitePatterns Ribosomal protein L19e signature. 262 281 IPR023638 -
Lele13g2091 464 SUPERFAMILY DNA-binding domain 64 122 IPR016177 GO:0003677
Lele13g2091 464 PRINTS Ethylene responsive element binding protein signature 87 103 IPR001471 GO:0003700|GO:0006355
Lele13g2091 464 PRINTS Ethylene responsive element binding protein signature 65 76 IPR001471 GO:0003700|GO:0006355
Lele13g2091 464 Pfam Ribosomal protein L19e 259 400 IPR000196 GO:0003735|GO:0005840|GO:0006412
Lele13g2091 464 MobiDBLite consensus disorder prediction 312 334 - -
Lele13g2091 464 SMART rav1_2 64 127 IPR001471 GO:0003700|GO:0006355
Lele13g2091 464 Gene3D - 257 311 IPR015972 GO:0003735|GO:0005840|GO:0006412
Lele13g2091 464 Coils Coil 201 221 - -
Lele13g2091 464 MobiDBLite consensus disorder prediction 113 148 - -
Lele13g2091 464 Gene3D AP2/ERF domain 64 122 IPR036955 GO:0003700|GO:0006355
Lele13g2091 464 Pfam AP2 domain 65 113 IPR001471 GO:0003700|GO:0006355
Lele13g2091 464 PANTHER 60S RIBOSOMAL PROTEIN L19 256 443 IPR039547 GO:0003723|GO:0003735|GO:0022625
Lele13g2091 464 MobiDBLite consensus disorder prediction 399 464 - -
Lele13g2091 464 SMART Ribosomal_L19e_2 258 401 IPR000196 GO:0003735|GO:0005840|GO:0006412
Lele13g2091 464 Gene3D - 312 443 - -
Lele13g2091 464 FunFam Ethylene-responsive transcription factor 2 63 122 - -
Lele13g2091 464 MobiDBLite consensus disorder prediction 399 439 - -
Lele13g2091 464 MobiDBLite consensus disorder prediction 312 340 - -
Lele13g2091 464 CDD AP2 65 122 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g2091 Lele-ChrLele13 27850807 27854411 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g2091 256 464 Cytoplasmic Ribosomal Protein Gene Family AT3G16780 85.167 8.31e-123 355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele13g2091 Ribosomal_L19e 8.4e-64 No_clan