Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g2085 ATGAGGCAGCTCAAGAGAAGAACTCTCTCACTGGCCATTCTCCCCCTACTCTTGTTCCTCGTCAAAGCAACAGACCCACAAGAAATAACGCACCTGCATTCTCAGAAACATCTTCAAGTAGCTCATTCCACTTGCCAAGGAACACTTTATCCTGAACTTTGTGTTTCAACGCTCGCGTCCTTCCCGGATCTTACCTCTAAATCTGTTCCCCAAGTCATCTGCTCCCTTGTCAACCACACCATGGAGGAGGTCAGATCCTCCTCCTCTAACTGTACCGGTCTCAGAAGAAAGCTCAGAAGCCTAAACCCACTTCAACGGAGAGCTCTCGATGATTGCCTCCAGCTGTTTGATTACACTCAGGAGGAATTCAAAACCAGCTTGGCAGATCTCTCCCAGTCACAGATCGATTCCAAGAGCTACCACGACTCGCAAACTCTGCTGAGCGGCGCAATGACTAATGTTTACACGTGCCTCGACGGCTTTGCCGACGGCGACACCAATGGACACGTGAGACGCCTCGTCCAGGATGGCTTGTATCGGATTTGCCACCACGTAAGTAACTCATTGGCTATGCTAAAAAAAATAAAGGGGGTGAAGAAACAATCCCCGTCCGAGACATTCCCAGCCAAAATGAAGCACGGCTTCCCATCTTGGCTCACCTCCAAAGACAGGAAGCTTCTTCAAGCTGCTGTTAATGAAACCAGGTTCGATCTAGTGGTGGCCAAGGATGGCTCCGGCAACTTCACCACCATCGGGGAAGCAGTATCCGCGGCCCCCAACTCCACCAAAACCAGGTTTGTGATACACATAAAAGCTGGGGCGTACTTCGAGAACGTGGAGGTGATCAGGAAGAAGACCAATCTGATGTTCGTGGGAGATGGGATAGGGAAGACGATAGTGAAAGCCAGTAGAAATGTGGTGGATGGGTGGACCACCTTTCAATCCGCTACTGTAGCGGTGGTAGGAGACGGATTCATCGCGATAGGGATCACCATAGAGAACTCGGCGGGGCCCAGCAAGCACCAGGCAGTAGCCCTCAGGAACGGCGCTGACCTCTCCGCCTTCTACCAATGCAGCTTCATCGGCTACCAAGACACCCTCTACGCCCATTCCCTCCGTCAGTTCTACCGCGAATGCGACATCTACGGCACCATCGACTTCATCTTCGGCAATGCCGCCTCCGTGTTCCAAAACTGTAACCTGTACGCGCGCAAGCCCAATGACAAGCAGAAGAACCTGTTCACGGCTCAAGGCAGAGAGGACCCTAATCAGAATACGGGCATTTCCATAATCAACTCCAAGGTGGCCGCGGCTTCGGACTTAATCCCGGTGAAGTCATCGTTCCCGACGTACCTGGGGAGGCCTTGGAAACAGTACTCGAGGACGGTGTATGCGGGATGCTTCATGGAGGATTTGATTGATCCGGCGGGATGGCTGGAATGGAACGGGACGTTTGCCTTGGATACGTTGTATTATGGTGAGTACAAGAACAGGGGTCCAGGTTCCAATACGACTGGGAGAGTGAATTGGAAAGGTTACAGGGTCATCAATTCCTCCACAGAGGCTTCTCAGTTCACTGTTGCCCAATTCATTCAGGGCTCCGAGTGGTTGAACTCCACCGGTGTTCCTTTCTTACCCGGTCTTAGTCCCTGA 1653 0.5209 MRQLKRRTLSLAILPLLLFLVKATDPQEITHLHSQKHLQVAHSTCQGTLYPELCVSTLASFPDLTSKSVPQVICSLVNHTMEEVRSSSSNCTGLRRKLRSLNPLQRRALDDCLQLFDYTQEEFKTSLADLSQSQIDSKSYHDSQTLLSGAMTNVYTCLDGFADGDTNGHVRRLVQDGLYRICHHVSNSLAMLKKIKGVKKQSPSETFPAKMKHGFPSWLTSKDRKLLQAAVNETRFDLVVAKDGSGNFTTIGEAVSAAPNSTKTRFVIHIKAGAYFENVEVIRKKTNLMFVGDGIGKTIVKASRNVVDGWTTFQSATVAVVGDGFIAIGITIENSAGPSKHQAVALRNGADLSAFYQCSFIGYQDTLYAHSLRQFYRECDIYGTIDFIFGNAASVFQNCNLYARKPNDKQKNLFTAQGREDPNQNTGISIINSKVAAASDLIPVKSSFPTYLGRPWKQYSRTVYAGCFMEDLIDPAGWLEWNGTFALDTLYYGEYKNRGPGSNTTGRVNWKGYRVINSSTEASQFTVAQFIQGSEWLNSTGVPFLPGLSP 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g2085 550 FunFam Pectinesterase 231 548 - -
Lele13g2085 550 Pfam Pectinesterase 237 533 IPR000070 GO:0030599|GO:0042545
Lele13g2085 550 Pfam Plant invertase/pectin methylesterase inhibitor 42 191 IPR006501 GO:0004857
Lele13g2085 550 Gene3D - 232 548 IPR012334 -
Lele13g2085 550 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 42 195 IPR035513 -
Lele13g2085 550 TIGRFAM PME_inhib: pectinesterase inhibitor domain 10 176 IPR006501 GO:0004857
Lele13g2085 550 ProSitePatterns Pectinesterase signature 2. 381 390 IPR033131 -
Lele13g2085 550 SMART PMEI_2 36 191 IPR006501 GO:0004857
Lele13g2085 550 PANTHER PECTINESTERASE 20 538 - -
Lele13g2085 550 SUPERFAMILY Pectin lyase-like 236 547 IPR011050 -
Lele13g2085 550 Gene3D Invertase/pectin methylesterase inhibitor family protein 40 197 IPR035513 -
Lele13g2085 550 CDD PMEI-like_3 43 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g2085 Lele-ChrLele13 27814972 27818910 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g2085 65 544 Carbohydrate Esterase AT4G02320 53.753 0.0 540