Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g2084 ATGCAAATTAAACGGCACACGATTAATTCGAATGCATTGAACGGTCCATCAATCAACCTTTATTTATTCTCAGTCCACGGACGAAAACTGCTCCAGTCCGGTGACCAAAGTGTGGAGATCGACGACATCGTGGTTGTCAGTCAGGACGGAAGCGGAAACTTCACCACCATCAACGAGGCCAACAACGCTGCCCCTAACAACACAGCTTCCGGTGCAGGTTACTTCTTGATCTTCATCACCGAGGGTTTGTACCAAGAATACGTATCCATACCCAAACAGAAGTACTTGATGTTAGTGGGAGATGGAAACAACCGCACCGTCATCACCGGAGACCACAACGTCGTCGACGGCTTTACAACTTTCAACACAGCGACGTTTGCCGTGGTGGCAGAAGGATTCGTGGCGGTGAACATTACATTCCGTAACACGGCGGGGCCGAGCAAGAACCAAGCCGTGGCCTTGAGGAGCGGAGCGGACCTGTCCACGTTCTACAGCTGCAGCTTCGAAGGGTACCAAGACTCCCTGTACACACATTCTCTGAGGCAATTCTACAGAGAATGCGACATATACGGCACAGTGGACTTCATATTCGGAAATGCGGCCGTGGTTCTACAAAATTGCAACCTGTATCCCCGGCTTCCGTTGAGCGGTCAGTTCAACGCGATCACGGATCAGGATCAGGATCGAACGGACCAGAATCAGAACACAGGCACGTCGATACAGAATGCGACCATAAAAGCAGCCGCCTATTTGGCTCCGTCAGTAGGGTCGGTGAAGACGTTCCTGGGAAGGCCGTGGAAGGAGTACTCGAGAACGGTGTTCATGGAGTCATGGATGGACAGTCTGATCAATCCTGCAGGTTGGCGGGAGTGGAATGGCGACTTTGCATTGAGCACGTTGTACTACGCAGAGGATAACAACACTGGACCGGGTGTTGACACAATGAGAAGGGTGACGTGGCCAGGTTACCACGTCATCAATGCCACGGATGCGGCTAATTTCACGGGTCCAACTTCCTGA 1020 0.5186 MQIKRHTINSNALNGPSINLYLFSVHGRKLLQSGDQSVEIDDIVVVSQDGSGNFTTINEANNAAPNNTASGAGYFLIFITEGLYQEYVSIPKQKYLMLVGDGNNRTVITGDHNVVDGFTTFNTATFAVVAEGFVAVNITFRNTAGPSKNQAVALRSGADLSTFYSCSFEGYQDSLYTHSLRQFYRECDIYGTVDFIFGNAAVVLQNCNLYPRLPLSGQFNAITDQDQDRTDQNQNTGTSIQNATIKAAAYLAPSVGSVKTFLGRPWKEYSRTVFMESWMDSLINPAGWREWNGDFALSTLYYAEDNNTGPGVDTMRRVTWPGYHVINATDAANFTGPTS 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g2084 339 PANTHER PECTINESTERASE 28 335 - -
Lele13g2084 339 Gene3D - 37 338 IPR012334 -
Lele13g2084 339 FunFam Pectinesterase 37 338 - -
Lele13g2084 339 Pfam Pectinesterase 44 335 IPR000070 GO:0030599|GO:0042545
Lele13g2084 339 SUPERFAMILY Pectin lyase-like 42 336 IPR011050 -
Lele13g2084 339 ProSitePatterns Pectinesterase signature 2. 189 198 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g2084 Lele-ChrLele13 27811227 27812340 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g2084 38 335 Carbohydrate Esterase AT1G02810 73.579 1.05e-159 457