Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g2052 ATGAGTGATAACTCAGAGAGAGAAGGCTTTAATAAATACAACTTCAACAACACAACAGGTTCTCATCATTATCATCAAGATGGGGGAATCATCAAGGAGCAAGATCGCTTGCTTCCAATAGCTAATGTGGGGAGGATTATGAAGCAAATTCTGCCTCCAAACGCAAAAATCTCCAAAGAAGCGAAAGAAACCATGCAAGAATGTGTTTCTGAGTTCATAAGCTTCGTCACTGGGGAAGCATCTGATAAGTGTTACAAGGAGAAGCGCAAGACAGTGAATGGCGACGATATTTGCTGGGCCCTCGCCACTCTAGGGTTTGATGATTACGCCGACCCACTCAAGAGGTATTTGCTTAAGTTTAGGGAATCAGAAGGCGAGAGATCTAACCAAAATAAGGGTAACGATATTCATAGCGATGATATTAATATCTCTGATCAAGCTTCTGATTATGGAGGTGAGCCTCCAGCTAGGAGAGCCCCCACTACTAGTGCTTCCTCTGGTTCTGGGACCTCCTTGATGAGGTTCAATGGCAATTCTCTCTCACACCAGTTTTCAAACTTCTAG 564 0.4362 MSDNSEREGFNKYNFNNTTGSHHYHQDGGIIKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCYKEKRKTVNGDDICWALATLGFDDYADPLKRYLLKFRESEGERSNQNKGNDIHSDDINISDQASDYGGEPPARRAPTTSASSGSGTSLMRFNGNSLSHQFSNF 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g2052 187 MobiDBLite consensus disorder prediction 123 174 - -
Lele13g2052 187 ProSitePatterns NF-YB/HAP3 subunit signature. 68 84 IPR003956 GO:0005634|GO:0006355|GO:0043565
Lele13g2052 187 MobiDBLite consensus disorder prediction 159 174 - -
Lele13g2052 187 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 8 144 IPR027113 GO:0001228|GO:0006355|GO:0016602
Lele13g2052 187 FunFam Nuclear transcription factor Y subunit B-3 26 150 - -
Lele13g2052 187 Gene3D Histone, subunit A 28 150 IPR009072 GO:0046982
Lele13g2052 187 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 37 101 IPR003958 -
Lele13g2052 187 SUPERFAMILY Histone-fold 34 145 IPR009072 GO:0046982
Lele13g2052 187 PRINTS CCAAT-binding transcription factor subunit A signature 65 83 - -
Lele13g2052 187 PRINTS CCAAT-binding transcription factor subunit A signature 103 121 - -
Lele13g2052 187 PRINTS CCAAT-binding transcription factor subunit A signature 84 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g2052 Lele-ChrLele13 27655437 27656000 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g2052 10 131 CCAAT-HAP3 Transcription Factor Family AT2G47810 65.185 2.52e-61 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Lele13g2052 CBFD_NFYB_HMF 7.1e-27 CL0012
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g2052 13 27655437 27656000 Lele05g1557 05 9972488 9974432 CCT
Lele13g2052 13 27655437 27656000 Lele06g1403 06 9030073 9032016 CCT
Lele13g2052 13 27655437 27656000 Lele07g1613 07 9975712 9979010 CCT
Lele13g2052 13 27655437 27656000 Lele08g1402 08 8976671 8978607 CCT
Lele13g2052 13 27655437 27656000 Lele15g0354 15 2023155 2023628 hybridization
Lele13g2052 13 27655437 27656000 Lele16g0372 16 2038954 2039517 hybridization