Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g2051 ATGCGCACACCAGTGAGAATACTACATCTTGAGGCATGTTCCAAGGTCATCGCAAGTCGTGAAAGATTTGGGGTCCTTGCACAAAATGAGGATTATGAGGGAAAGCAATATAGTAATAAGAAGAATAGTAGAGATGTTGTTTATGAAGCAGAGCATGAAAATGTTGTCCAAATAAGTAAGGCTACCGGACGTCCGGCGAAGGTATGGCGGAAAAGTAACATGAAGAAGCACGATGAGGGGAGATCAACGGGAAAGAATGGGATGATGAATGAAGTGATGGATGATGGGAAAGAAGTACGAAAAAGGAGTGAAAAAAGGGGTAGGAGCGGTGGACAATTAATGCTAACATTGGATGAAGCAAGGGAGGATAGGTTGGAAGGAGTAGACATTGTGAGAGACGTTGGGGATGAAAACAAGTTGACTTTGGGCCAAAATAGTGGATCAATGGAAGCAAGAGGGACTAATACGCAGGAAGGCCAACAAAAGGATTTTGGGCCAAGTCCAATTCAGGTGACGAAGCAAGTTTGTCCTCAGGGGAACAGCAACAAGACAAGCACTTGCATGGCTCAAGCTCAAGACCTTCCCACAACAATGCCTCCAGTGATCATCAAAACCAGCTTCAATCCACCAAGAAGAAGCGAAATCTCCCGGGAACTCCAGGCAATTTCAACTCTACTCCGATCCTCAACATTCGCCATATATAGCTTCTTTTCATGTTCCTCTTCTAACTCCATGATATCACGTCCTGATGGATTAGATCCGAATGCTGAAGTGATTGCTTTGTCACCAACAACATTGATGGCAAAGAACAGATTCGTGTGTGAGATGTGCAACAAAGGGTTTCAGAGGGACCAGAACCTGCAGTTGCACCGGAGAGGTCACAATCTGCCATGGAAACTGAGACAGAGAGCGTGCAATGAGGTGAGCAAGAAACGAGTTTACGTGTGCCCAGAGCCTTCATGCGTCCACCATAGCCCAGCTCGAGCACTCGGAGACCTCACCGGCATCAAAAAGCACTTCAGCCGCAAGCACGGCGAGAAGAAATGGAAATGCGACGAATGCTCCAAAAAATACGCCGTCCAATCTGATTGGAAAGCCCACCAGAAAACCTGCTGTACCCGCGAATACAAATGCAATTGTGGCACCATTTTTTCCAGGAGAGAGAGTTTTATCACTCACAGAGCATTTTGTGATGCATTGACTGAAGAAAACAACAGGGTGAATTCTGCAGTATCTCTCAACACTCATTCCAACACAGCATCTGAATTAAACACAATGGTTCCTCAAGAAATTCTTGCAGTGTCATTCAAGTCGACGAGCACGAGCATGTGGGGAGGCATGTTCACGACCACTTCAAAAGGGTTGCCTCCTCTTCCTCTGCCTAGCTCCCCTGTTTTCAATTCCGTCGTCCAAGACGGCCGGAATGTTTCAGAGTCAGCTCAAGCGTCTGCAACGGCTTTACTACAGAAAGCAGCACAAATGGGGGCCACCGCAAGCAATGATGTCGGTAACTATGGCATGGTTCAAAAAGGGTATGTTACTTCCATGGCAGGTTCTGATTACCAGCCTGAACCCAACTTGGCTGGGACTAGTGGAGGTGGAGAATTCAGCAACCTATTGTTTCAGAAAGGTCCGCAAGAAATGTCGCAATCGTTTGGCTCTTACAATGATATGGAAATGTTGAGCCAAATGGTGATGGGACCAAGAGATGGAGTGGAAAGTGAAATGACCAGAGTTCATGACTTCTTGGGCGTTGGGGGACTCAATCCTCTGGCGCCGAATTCGCACGAGTTCCACGAACTACCAATGGATCCTTCTGAGCCTTTACTCTTCGTCTGGTCATCTCTCTTTCATACTCTTTTAGCATTAAACTCCTTTTCTTCAGCAAAAGAGTTAGACTCTTTTTCTACACGAGAAATACGAGAATACCAGTATTGACTTAATGCAATCGGTCACATTCTGATCGAAGTAATACGCTTCAGAAAAGCAGCCATTAGAGAAAAGATGGTTGTAGTTCATATTCAACGAGCCTGGGTTGATCTGCATATGCAAGTATTGTCAGGCTTTTACCGTGCCGTTTTATCATCTTGTTTTCTTTGGTCAAAACAATTTATAGATTATCTAAACTCATATTAG 2136 0.4527 MRTPVRILHLEACSKVIASRERFGVLAQNEDYEGKQYSNKKNSRDVVYEAEHENVVQISKATGRPAKVWRKSNMKKHDEGRSTGKNGMMNEVMDDGKEVRKRSEKRGRSGGQLMLTLDEAREDRLEGVDIVRDVGDENKLTLGQNSGSMEARGTNTQEGQQKDFGPSPIQVTKQVCPQGNSNKTSTCMAQAQDLPTTMPPVIIKTSFNPPRRSEISRELQAISTLLRSSTFAIYSFFSCSSSNSMISRPDGLDPNAEVIALSPTTLMAKNRFVCEMCNKGFQRDQNLQLHRRGHNLPWKLRQRACNEVSKKRVYVCPEPSCVHHSPARALGDLTGIKKHFSRKHGEKKWKCDECSKKYAVQSDWKAHQKTCCTREYKCNCGTIFSRRESFITHRAFCDALTEENNRVNSAVSLNTHSNTASELNTMVPQEILAVSFKSTSTSMWGGMFTTTSKGLPPLPLPSSPVFNSVVQDGRNVSESAQASATALLQKAAQMGATASNDVGNYGMVQKGYVTSMAGSDYQPEPNLAGTSGGGEFSNLLFQKGPQEMSQSFGSYNDMEMLSQMVMGPRDGVESEMTRVHDFLGVGGLNPLAPNSHEFHELPMDPSEPLLFVWSSLFHTLLALNSFSSAKELDSFSTREIREYQYXLNAIGHILIEVIRFRKAAIREKMVVVHIQRAWVDLHMQVLSGFYRAVLSSCFLWSKQFIDYLNSY 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g2051 711 ProSitePatterns Zinc finger C2H2 type domain signature. 274 294 IPR013087 -
Lele13g2051 711 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 213 596 IPR031140 -
Lele13g2051 711 Gene3D Classic Zinc Finger 328 408 - -
Lele13g2051 711 ProSiteProfiles Zinc finger C2H2 type domain profile. 272 294 IPR013087 -
Lele13g2051 711 FunFam protein indeterminate-domain 12-like 251 320 - -
Lele13g2051 711 MobiDBLite consensus disorder prediction 76 111 - -
Lele13g2051 711 Pfam Zinc finger, C2H2 type 272 294 IPR013087 -
Lele13g2051 711 FunFam protein indeterminate-domain 5, chloroplastic-like 327 406 - -
Lele13g2051 711 MobiDBLite consensus disorder prediction 139 177 - -
Lele13g2051 711 MobiDBLite consensus disorder prediction 91 108 - -
Lele13g2051 711 SMART c2h2final6 314 344 IPR013087 -
Lele13g2051 711 SMART c2h2final6 349 369 IPR013087 -
Lele13g2051 711 SMART c2h2final6 272 294 IPR013087 -
Lele13g2051 711 SUPERFAMILY beta-beta-alpha zinc fingers 271 370 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g2051 Lele-ChrLele13 27640019 27653630 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g2051 247 499 IDZ Gene Family AT1G55110 57.143 6.23e-96 302
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele13g2051 zf-C2H2 0.014 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g1217 05 7638372 7640164 Lele13g2051 13 27640019 27653630 CCT
Lele13g2051 13 27640019 27653630 Lele05g1097 05 6829513 6832109 CCT
Lele13g2051 13 27640019 27653630 Lele06g0963 06 5941611 5944763 CCT
Lele13g2051 13 27640019 27653630 Lele07g1138 07 6866777 6869424 CCT
Lele13g2051 13 27640019 27653630 Lele08g0949 08 5988807 5991839 CCT
Lele13g2051 13 27640019 27653630 Lele15g0355 15 2028189 2029552 hybridization