Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g2035 ATGTCGTTTAGGAGTATCATCCAGGATATAAGGGGTGAATTTGGGAGTATTTCAAGGAAAGGATTTGAGGTGAAGTTTGGGTATGGGGTGAGATCGCGGTCACAGTCATACCGCGATGCTGGGGATCATGTGATCGTTGCCGATGGTCTGAGACAGAGTTGTTGGGCTAATATGCCCCCAGAGCTTCTGAGGGATGTGTTAATGAGGATCGAGGCCTCTGAAGATAGATGGCCTGCCCGAAAACATGTAATTGCTTGTGCTGGTGTCTGCCGCAGTTGGAGAGAAATCATGAAAGAAATTGTGAAATCTCCTGAATTATCTGGCAAGCTGACACTCCCAATCTCCTTGAAGCAGCCTGGTCCAAGGAACTCTCTTCTTCAGTGCTATATTAAACGGAATCGCAGTAATCAAACATATTATCTGTACCTCAGTCTAAACCAAGCTTCAATCGATGATTGCAAGTTCCTTCTTGCTGCACGCAAGTGTCGACGTCCTACCCATACAGACTATATCATCTCTATAAACTGCGATGATGTATCAAGAGGGAGTAGCACTTACATTGGAAAATTGAGGTCAAACTTTCTGGGTACCAAATTCACCGTGTATGATGCGCACCCTCCAATTTGTGGTGCCAAAGGGACAAAATCTCGTTCGACTAGACCAGTTAGTCTCAAGCAAGTGTCTCCAAGAGTTCCTGCTGGCAACTATCCCATTGCACATGTCTCATATGATCTGAATGTCCTGGGCTCCAGGGGCCCAAGGATAATGCATTGTGTTATGGATGCCATCCCAGCTTCAGCTGTTGAGCCAGGAGATCAAAATCAACTCGCCTGGAAAGTTTCCAATCAGCACCTTTGCCTTCCCACAACAGGGGAATGCTGGTATTACAAAACAAGTCCCCCAGGTGGCATGAGCAACTCCAATGTTGGTGTCTAA 936 0.4637 MSFRSIIQDIRGEFGSISRKGFEVKFGYGVRSRSQSYRDAGDHVIVADGLRQSCWANMPPELLRDVLMRIEASEDRWPARKHVIACAGVCRSWREIMKEIVKSPELSGKLTLPISLKQPGPRNSLLQCYIKRNRSNQTYYLYLSLNQASIDDCKFLLAARKCRRPTHTDYIISINCDDVSRGSSTYIGKLRSNFLGTKFTVYDAHPPICGAKGTKSRSTRPVSLKQVSPRVPAGNYPIAHVSYDLNVLGSRGPRIMHCVMDAIPASAVEPGDQNQLAWKVSNQHLCLPTTGECWYYKTSPPGGMSNSNVGV 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g2035 311 Gene3D Tubby Protein; Chain A 115 295 IPR025659 -
Lele13g2035 311 SUPERFAMILY F-box domain 48 99 IPR036047 GO:0005515
Lele13g2035 311 SUPERFAMILY Tubby C-terminal domain-like 104 288 IPR025659 -
Lele13g2035 311 PRINTS Tubby superfamily signature 235 262 IPR000007 -
Lele13g2035 311 PRINTS Tubby superfamily signature 170 186 IPR000007 -
Lele13g2035 311 PRINTS Tubby superfamily signature 186 210 IPR000007 -
Lele13g2035 311 Pfam Tub family 116 275 IPR000007 -
Lele13g2035 311 PANTHER TUBBY-RELATED 34 270 - -
Lele13g2035 311 Pfam F-box domain 55 101 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g2035 Lele-ChrLele13 27549693 27552881 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g2035 1 271 TUB Transcription Factor Family AT2G47900 75.824 6.67e-150 425
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Lele13g2035 Tub 2e-52 CL0395