Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g2027 ATGGGCTCCAAGCCGTGGCTGTACCCGGCTCCGACTTATCGAACTCTAAATACTCACTGGGATACCGATGAAGATGCCCCCGGTCCCCGAATCAGCCACACACTCACAGCCGTTGCCGCCACCAAGACGCACGGTCCCCGCCTTATCTTATTCGGGGGCGCCACCGCCATCGAAGGAGGCTCTTCCTCTACCCCCGGCATTCGATTAGCGGGAGTCACAAATTCAGTTCATTCATACGACGTTGCAACAAAAAAATGGACCAGAATAAGACCCGCTGGCGAGCCGCCCTCTCCTCGGGCTGCTCATGCTGCCGCTGCTGTTGGAACTATGGTTGTTTTCCAGGGCGGGATAGGTCCAGCCGGGCATTCAACAGATGATCTCTATGTGCTTGACATGACCAATGATAAATTCAAGTGGCACAGAGTCGTTGTGCAAGGACAAGGACCTGGGCCTCGCTATGGTCATGTGATGGACTTGGTTGCTCAAAGATATCTCGTCACTGTCAGCGGGAATGACGGGAAAAGAGTTCTGTCTGATGCTTGGGCTTTGGATACTGCTCAAAAACCTTACATGTGGCAGAAGTTGAACCCAGAAGGTGACAGACCTTCCGCTAGAATGTACACGACTGCTAGTGCCCGCTCAGATGGTATGTTCCTGCTGTGTGGTGGAAGAGACTCTTCTGGAGCAGCACTAGGAGATGCCTATGGACTGCTCATGCATAGGAATGGTCAGTGGGAATGGACTCTTGCACCTGGAGTTTCTCCTTCCCCAAGGTATCAACATGCTGCGGTTTTTGTAGGTGCAAGATTGCATGTTACAGGAGGTGTTCTCAAGGGTGGACGTGCAGTGGAAGGTGAAGCCGCCATTGCAGTATTGGACACCGCTGCTGGGGTTTGGCTGGACAGAAATGGACTTGTGACCACCTCCTCACGCACAAGCAAAGGTTATGATTATAACCCTTCTTTGGATCTTATGCGTCGTTGTCGTCATGCAGCAGCTGCTGTTGATGCTTGCATATATATTTATGGTGGTCTAAGAGGAGATACTCTGCTAGATGATTTCGTAGTGGCTGAAAATTCACAACCTCAGTCTAAAATTAACTCTCCTGTTTTAACGGCTTCAACTATTGCAAGCCCCAACAGGAACCAATCTAACTTAAATTATGACGTGAAAACACTAGGTTTGGGTGATGGATCAGACATTCACTCATCCGGTGGCATGGGCACCATGGACAAAAACTCCATGGAAAAACTGAGGGAAGCATCTGCTGCTGAGGCTGAGGCAGCAAGTGCTGTCTGGCAAGCTGTACAATCTGTATCAAGCAGTCAAGCTGAAGAAACATCCGTGTCAGATGACAACTCACAAGCTGCAGAAACAGCTTCAGATGGCAGTGACGTAGGGGGGGATGTTCGCCTTCATCCTAGAGCTGTTGTAGTTGCTAAAGAGGCTGTGGGTAACCTGGGGGGAATGGTGAGACAGTTATCACTGGATCAATTTGAAAATGAGAGCAGAAGGATGATTCCCATAAATAATGATATGCCATATTCTGCAAAAAAGTTCACCAGGCAGAAATCCCCTCAGGGCTTACATAAAAAGATAATTTCAACTCTACTCAGGCCTCGCAACTGGAAAGCTCCTGCAAATAGGCGGTTCTTCTTGGATTCTTATGAAGTGGATGAGTTGTGTTATGCTGCTGAACAGATATTCATGCATGAACCAACTGTTCTACAGCTGAAAGCTCCTGTCAAAGTATTTGGTGATCTTCATGGGCAGTTTGGTGATTTGATGCGGCTATTTGATGAATATGGATTTCCTTCAACTGCTGGAGACATAACGTATATCGACTACCTGTTTTTGGGGGATTATGTTGATCGAGGACAGCACAGCTTGGAAACCATCACCTTGCTTCTTGCTCTTAAGATTGAATATCCTGAGAATGTTCACTTGATACGGGGAAACCATGAAGCAGCTGACATAAATGCTCTATTTGGTTTTCGCATTGAGTGCATTGAGAGAATGGGAGAAAATGATGGAATATGGGCATGGACACGATTCAATCAACTTTTTAACTATCTTCCTCTTGCTGCCCTCATTGAAAAGAAAATCATATGTATGCATGGTGGTATAGGAAGGTCTATCGATTCAGTAGAACAGATAGAAAAGCTTGAAAGGCCCATAACAATGGATGCAGGATCTATTATTTTAATGGACCTTCTATGGTCTGATCCCACTGAGAATGATAGCATAGAGGGTTTGAGACCAAACGCTAGAGGGCCAGGCCTTGTAACATTTGGGCCTGATCGCGTCACTGAATTCTGCAAGAAAAATAAATTACAGCTCATTTTACGAGCTCACGAGTGTGTCATGGATGGTTTTGAGCGATTTGCCCAGGGACAGTTGATCACTCTTTTTTCTGCAACTAATTATTGTGGGACGGCTAACAATGCTGGAGCCATACTAGTAGTTGGAAGGGGCTTGGTTGTGGTCCCTAAATTAATTCATCCCTTGCCCCCTCCCCTTCAGTCTCCTGAAACATCTCCTGAGCGTGTCATGGAGGAGACATGGATGCAGGAGCTTAATATTCAGAGGCCCCCAACCCCTACTCGGGGTCGACCCCAGCCGGACCATGATCGCAGTTCACTGGCATACATATGA 2655 0.4734 MGSKPWLYPAPTYRTLNTHWDTDEDAPGPRISHTLTAVAATKTHGPRLILFGGATAIEGGSSSTPGIRLAGVTNSVHSYDVATKKWTRIRPAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDMTNDKFKWHRVVVQGQGPGPRYGHVMDLVAQRYLVTVSGNDGKRVLSDAWALDTAQKPYMWQKLNPEGDRPSARMYTTASARSDGMFLLCGGRDSSGAALGDAYGLLMHRNGQWEWTLAPGVSPSPRYQHAAVFVGARLHVTGGVLKGGRAVEGEAAIAVLDTAAGVWLDRNGLVTTSSRTSKGYDYNPSLDLMRRCRHAAAAVDACIYIYGGLRGDTLLDDFVVAENSQPQSKINSPVLTASTIASPNRNQSNLNYDVKTLGLGDGSDIHSSGGMGTMDKNSMEKLREASAAEAEAASAVWQAVQSVSSSQAEETSVSDDNSQAAETASDGSDVGGDVRLHPRAVVVAKEAVGNLGGMVRQLSLDQFENESRRMIPINNDMPYSAKKFTRQKSPQGLHKKIISTLLRPRNWKAPANRRFFLDSYEVDELCYAAEQIFMHEPTVLQLKAPVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRIECIERMGENDGIWAWTRFNQLFNYLPLAALIEKKIICMHGGIGRSIDSVEQIEKLERPITMDAGSIILMDLLWSDPTENDSIEGLRPNARGPGLVTFGPDRVTEFCKKNKLQLILRAHECVMDGFERFAQGQLITLFSATNYCGTANNAGAILVVGRGLVVVPKLIHPLPPPLQSPETSPERVMEETWMQELNIQRPPTPTRGRPQPDHDRSSLAYI 884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g2027 884 MobiDBLite consensus disorder prediction 442 468 - -
Lele13g2027 884 MobiDBLite consensus disorder prediction 442 461 - -
Lele13g2027 884 ProSitePatterns Serine/threonine specific protein phosphatases signature. 650 655 IPR006186 GO:0016787
Lele13g2027 884 SMART pp2a_7 553 839 IPR006186 GO:0016787
Lele13g2027 884 FunFam Serine/threonine-protein phosphatase 518 857 - -
Lele13g2027 884 PRINTS Serine/threonine phosphatase family signature 777 797 IPR006186 GO:0016787
Lele13g2027 884 PRINTS Serine/threonine phosphatase family signature 799 815 IPR006186 GO:0016787
Lele13g2027 884 PRINTS Serine/threonine phosphatase family signature 687 713 IPR006186 GO:0016787
Lele13g2027 884 PRINTS Serine/threonine phosphatase family signature 717 744 IPR006186 GO:0016787
Lele13g2027 884 PRINTS Serine/threonine phosphatase family signature 616 643 IPR006186 GO:0016787
Lele13g2027 884 PRINTS Serine/threonine phosphatase family signature 581 608 IPR006186 GO:0016787
Lele13g2027 884 PRINTS Serine/threonine phosphatase family signature 649 673 IPR006186 GO:0016787
Lele13g2027 884 Gene3D - 195 369 IPR015915 GO:0005515
Lele13g2027 884 Gene3D - 6 194 IPR015915 GO:0005515
Lele13g2027 884 Gene3D - 512 859 IPR029052 -
Lele13g2027 884 PIRSF STPPP_BSU1 1 884 IPR012391 GO:0004721|GO:0009742
Lele13g2027 884 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE BSL3 8 884 - -
Lele13g2027 884 Pfam Galactose oxidase, central domain 45 106 - -
Lele13g2027 884 Pfam Serine-threonine protein phosphatase N-terminal domain 532 579 IPR031675 -
Lele13g2027 884 SUPERFAMILY Kelch motif 73 357 IPR015915 GO:0005515
Lele13g2027 884 SUPERFAMILY Metallo-dependent phosphatases 534 845 IPR029052 -
Lele13g2027 884 MobiDBLite consensus disorder prediction 858 884 - -
Lele13g2027 884 FunFam Serine/threonine-protein phosphatase 9 192 - -
Lele13g2027 884 Pfam Calcineurin-like phosphoesterase 581 788 IPR004843 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g2027 Lele-ChrLele13 27518228 27524210 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g2027 559 780 Calmodulin-binding Proteins AT5G63870 31.008 5.42e-28 113
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g2027 13 27518228 27524210 Lele15g0377 15 2162108 2167899 hybridization
Lele13g2027 13 27518228 27524210 Lele16g0397 16 2162899 2168566 hybridization