Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g2013 ATGGTGGGGAAAGGGAGAGAATTCGATGCAAAGAGTAAAGGGAGCTATAAAATGAGCAGAAAAGTGAACCGCTGGTCCAGTCCTGTTGTTGGTGTTGTGAGTTCCCTCGCTGACCCGTCGCCCACTCTCGAGCCTAACCTGGGCGTCGAGAAGTTATCGCCCCTGGCTGATACTTCATTTTCAGCTCTTCAGCATCGACTTCTTATCTCTCCAATGGCGTCGTTGGCTCTCAGAAACTGTGCTTCCAAACGCCTCTTCCCATTTTCTTCTCAAATCTACTGCTGTTCTCGAGCATCACTCTTTTCCCTTTCCCAGCTCCCTGAGTTGGTCTATGGAAACGAGACAACCTCTGCTTCCAATCCGTGGTGGAGGTCCATGGCTACTTTCACTCGAACAAAACCCCATGTTAACGTGGGGACTATCGGGCATGTTGATCATGGGAAGACTACACTCACCGCAGCAATTACCAAGGTTCTAGCAGAAGAAGGAAAAGCTAAGGCTATAGCGTTTGATGAAATTGATAAGGCTCCTGAAGAGAAAAAGAGAGGAATCACGATTGCAACGGCACATGTGGAGTATGAGACAGCTAAACGACATTATGCACATGTAGACTGCCCTGGACATGCGGACTATGTTAAAAATATGATTACAGGAGCAGCGCAGATGGATGGCGGTATTCTTGTTGTATCTGCCCCTGATGGACCCATGCCTCAAACCAAGGAACACATTCTTCTTGCTCGCCAAGTTGGTGTGCCATCTCTTGTGTGCTTTTTAAATAAAGTTGATGCTGTTGACGATCCAGAGTTGTTAGAGCTGGTTGAAATGGAGCTTCGTGAGCTTCTAAGCTTCTACAAGTTCCCGGGTGATGAAATCCCTATTGTTAGAGGTTCGGCATTGTCTGCCCTACAGGGTACAAATGATGAGATTGGCAGGACGGCCATTCTAAAATTGATGGATGCTGTGGATGAATATATTCCTGACCCTGTTCGCCAGCTTGACAAGCCTTTCTTAATGCCCATTGAAGATGTATTCTCTATTCAGGGACGTGGAACAGTGGCCACTGGCCGTGTGGAACAAGGAACCATAAAAGTTGGAGAAGAAGTTGAGATTTTGGGTCTAATGCAGGGTGGACCCCTGAAAACAACAGTGACTGGAGTTGAGATGTTTAAGAAGATATTGGATCAGGGACAAGCTGGTGACAACGTTGGTCTCCTTCTACGTGGTCTGAAAAGAGAAGACATCCAACGTGGTCAGGTCATTGCCAAGCCTGGTTCTCTAAAGACATACAAGAGGTTTGAGGCTGAAATTTATGTTCTCACAAAGGATGAAGGTGGGCGACACACTGCATTCTTCTCAAACTATAGACCTCAGTTTTACATGAGGACTGCTGATATCACTGGAAAGGTAGAATTGCCAGAAAATGTTAAGATGGTTATGCCTGGAGACAACGTTACTGCGGTGTTTGAGCTGATTTCACCTGTTCCTCTCGAAGCAGGACAAAGATTTGCTTTGAGAGAAGGAGGCAGAACAGTTGGTGCGGGTGTGGTGTCGAAAGTACAGCCCTAA 1566 0.4668 MVGKGREFDAKSKGSYKMSRKVNRWSSPVVGVVSSLADPSPTLEPNLGVEKLSPLADTSFSALQHRLLISPMASLALRNCASKRLFPFSSQIYCCSRASLFSLSQLPELVYGNETTSASNPWWRSMATFTRTKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDAVDDPELLELVEMELRELLSFYKFPGDEIPIVRGSALSALQGTNDEIGRTAILKLMDAVDEYIPDPVRQLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEILGLMQGGPLKTTVTGVEMFKKILDQGQAGDNVGLLLRGLKREDIQRGQVIAKPGSLKTYKRFEAEIYVLTKDEGGRHTAFFSNYRPQFYMRTADITGKVELPENVKMVMPGDNVTAVFELISPVPLEAGQRFALREGGRTVGAGVVSKVQP 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g2013 521 FunFam Elongation factor Tu 124 328 - -
Lele13g2013 521 Hamap Elongation factor Tu [tuf]. 124 521 IPR004541 GO:0003746|GO:0005525|GO:0006414
Lele13g2013 521 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 133 329 IPR000795 GO:0003924|GO:0005525
Lele13g2013 521 TIGRFAM small_GTP: small GTP-binding protein domain 136 272 IPR005225 GO:0005525
Lele13g2013 521 FunFam Elongation factor Tu 331 461 - -
Lele13g2013 521 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 430 521 IPR009001 -
Lele13g2013 521 PRINTS GTP-binding elongation factor signature 181 189 IPR000795 GO:0003924|GO:0005525
Lele13g2013 521 PRINTS GTP-binding elongation factor signature 201 211 IPR000795 GO:0003924|GO:0005525
Lele13g2013 521 PRINTS GTP-binding elongation factor signature 217 228 IPR000795 GO:0003924|GO:0005525
Lele13g2013 521 PRINTS GTP-binding elongation factor signature 254 263 IPR000795 GO:0003924|GO:0005525
Lele13g2013 521 PRINTS GTP-binding elongation factor signature 137 150 IPR000795 GO:0003924|GO:0005525
Lele13g2013 521 SUPERFAMILY Translation proteins 330 426 IPR009000 -
Lele13g2013 521 Pfam Elongation factor Tu domain 2 350 420 IPR004161 GO:0005525
Lele13g2013 521 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 131 351 IPR027417 -
Lele13g2013 521 CDD EF_Tu 134 328 IPR041709 -
Lele13g2013 521 CDD EFTU_III 427 516 - -
Lele13g2013 521 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 174 189 IPR031157 -
Lele13g2013 521 Gene3D Translation factors 331 461 - -
Lele13g2013 521 Pfam Elongation factor Tu C-terminal domain 426 519 IPR004160 -
Lele13g2013 521 PANTHER ELONGATION FACTOR TU-RELATED 128 520 - -
Lele13g2013 521 Pfam Elongation factor Tu GTP binding domain 133 326 IPR000795 GO:0003924|GO:0005525
Lele13g2013 521 CDD EFTU_II 336 424 IPR033720 -
Lele13g2013 521 TIGRFAM EF-Tu: translation elongation factor Tu 125 519 IPR004541 GO:0003746|GO:0005525|GO:0006414
Lele13g2013 521 Gene3D Translation factors 465 519 - -
Lele13g2013 521 Gene3D - 125 328 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g2013 Lele-ChrLele13 27419187 27424727 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g2013 131 519 Eukaryotic Initiation Factors Gene Family AT5G60390 30.734 9.24e-46 164