Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g2006 ATGATGAGAATCTCTATGGTGATGAGCAGGAATGTTACACAACCCCTAACCAATAGTCCTTCCGGCGGTAGAAAATTGAATCAGATCAATCTTCCGCGGCAGAAAGAGAAGGTGGTGGTGGTCATGGGAGCCACTGGCGCCGGAAAGTCCAAGCTCTCTATCGACCTCGCCACCCTTTTTCCCGTACAAATCATCAACTCCGACAAAATGCAAGTCTACAAAGGCCTTGACATAGCCACGAACAAAATCGCTAACAAAGACCGACGAGGGGTGCCTCACCATTTGTTAGGAACAGAGAGCCCCGACTCAGAGTTCACGGCCTCCCACTTCCGTGACGCGGCTTTACTCGCCATCGAGTCAATTACGTCTTGCGGACAGCTTCCGATCATCGTGGGAGGATCCAACTCGTATATTGAGGCACTAATCGACGACTACGACTATAAATTCCGATCGAGGTATGATTTATGTTGTCTCTGGGTAGACGTGTCAATGCCCGTGCTCGACCATTACGTGGCCAAGCGGGTTGATCAAATGCTGGAGAGCGGAATGGTGGATGAACTGAGACCATTTTTCAATCCAAAAGGAGACTACTCAGGGGGGATTAGAAAAGCTATCGGAGTTCCTGAGTTCGATCAGTATTTTCGAAACGAATCGTTGATTAGGGATGAAGGAATCAAGCAGAGGTTAATGGAAGAAGCGGTGAATGAAATTAAGAAAAACACGTACAAATTGGCACGTAAACAATTGGGGAAGATTCAGAGACTTCGCAATGTGAAGAGATGGAGGATTCAGCGGCTGGACGCGACAACCGTGTTACGCAACCATGGGGAAGAAGCAGAGGAGGCATGGAAGAAGATGGTGGCAGAGCCAAGTGCTATGATCGTAGCCAGGTTTCTTTACGAATTTCCCACTGCGAGCGTTGGCGCTAGCCTTAGACCGTCGACATCTTCATCAGCATCATCGGCCCTGGAAAGCGCCATGGCTACGGCGACGTGCTGA 999 0.4945 MMRISMVMSRNVTQPLTNSPSGGRKLNQINLPRQKEKVVVVMGATGAGKSKLSIDLATLFPVQIINSDKMQVYKGLDIATNKIANKDRRGVPHHLLGTESPDSEFTASHFRDAALLAIESITSCGQLPIIVGGSNSYIEALIDDYDYKFRSRYDLCCLWVDVSMPVLDHYVAKRVDQMLESGMVDELRPFFNPKGDYSGGIRKAIGVPEFDQYFRNESLIRDEGIKQRLMEEAVNEIKKNTYKLARKQLGKIQRLRNVKRWRIQRLDATTVLRNHGEEAEEAWKKMVAEPSAMIVARFLYEFPTASVGASLRPSTSSSASSALESAMATATC 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g2006 332 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 35 299 IPR039657 -
Lele13g2006 332 FunFam Adenylate isopentenyltransferase 5, chloroplastic 164 263 - -
Lele13g2006 332 Hamap tRNA dimethylallyltransferase [miaA]. 38 273 IPR018022 GO:0008033
Lele13g2006 332 Gene3D - 35 299 IPR027417 -
Lele13g2006 332 MobiDBLite consensus disorder prediction 311 332 - -
Lele13g2006 332 Gene3D Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 164 263 - -
Lele13g2006 332 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 37 178 IPR027417 -
Lele13g2006 332 Pfam IPP transferase 71 145 - -
Lele13g2006 332 Pfam IPP transferase 150 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g2006 Lele-ChrLele13 27392175 27393173 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g2006 151 299 C2H2 Transcription Factor Family AT2G27760 31.429 1.41e-22 96.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g1503 05 9628194 9629195 Lele13g2006 13 27392175 27393173 CCT
Lele13g2006 13 27392175 27393173 Lele13g2006 13 27392175 27393173 ECH
Lele13g2006 13 27392175 27393173 Lele15g0398 15 2289133 2290155 hybridization
Lele13g2006 13 27392175 27393173 Lele16g0421 16 2273723 2274715 hybridization