Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g2004 ATGGCCGGTCTCGGTAGAATCAAAATCGCTTTTCCTTCTCAATTCGCTTCGGCTTTTAGCTTCCGCAGGAAATTCGCCATATGCCTCGCGTCCAGCTCAAGAGGTGTTGTTTTCTTTGGGGACGGCCCTTACGTTTTTCTTCCGAACGTCGACGCCGCTCAATCGCTCACCTACAAGCCACTCATTGTCAACCCAGTGAGGACAGCTTCCACTTTCACACAAGGACAGCCTTCGTCTGAGTATTTCATCGGAGTCAAATCCATCAAAATCGATCAAAAAGTCGTGCCCAAAATCAACACCACTTTGCTGTCCATAGACGAAGAAGGCGTTGGTGGGACTAAGATAAGTACGGTGAACCCATACACAGTTTTGGAGGAGACGATCTTCAAGGCGGTGACGGAGGCATTCATCAGTGCTTCGGCTGCTAGGAACATCACCAGGGTGGGTGGAGTTGCTCCCTTCGAAGTGCGTTTCAGTACGAAGAACGTGGGGAGCACGCTGTTGGGTGCAGCGGTGCCGACCATGGAGCTTGTGCTTCAGAACAATGTGAGTTGGTTCATTTTTGGAGCGAACTCGATGGTGTGGGTGAAGGACGATGTGCTGTGTCTTGGGGTAGTGAATGGAGGCGACAACCCGAGGACTTCAATTGTGATAGGAGGGTATCAGTTGGAGAACAATCTTGTGCAGGTTGATTTGGCTTCTTCCAGACTAGGATTCAGCTCTTTGCTAAGCTCAAAAGCTTTACCTGAAAATACGAGCAGATTTTTGATGAAATTAAACAACGAAACTGTGTCAATCGAGCTCAAGAACGGCACTGTCGTCCATGGAACTATCACAGGTGTGGACATCAGTATGAATACACATTTAAAAACAGTCAAATTGACATTGAAGGGGAAAAACCCTGTCACTCTGGACCATCTCAGTGTTAGGGGAAACAATATCCGTTATTACATCCTTCCTGATAGCTTGAATCTTGAGACTTTACTGGTTGAGGAGACACCCAGGGTGAAACCCAAGAAGCCAACTGCCGGTACTGAAAGCCTTTGGGGCGTGGTCGAGGGCGAGGGCGTGGTCGTGGTCGAAGTCGCGGCCGTTGAATTGCATATTCTTGATCTCTATGGCTTGCAGTTGTAA 1134 0.4859 MAGLGRIKIAFPSQFASAFSFRRKFAICLASSSRGVVFFGDGPYVFLPNVDAAQSLTYKPLIVNPVRTASTFTQGQPSSEYFIGVKSIKIDQKVVPKINTTLLSIDEEGVGGTKISTVNPYTVLEETIFKAVTEAFISASAARNITRVGGVAPFEVRFSTKNVGSTLLGAAVPTMELVLQNNVSWFIFGANSMVWVKDDVLCLGVVNGGDNPRTSIVIGGYQLENNLVQVDLASSRLGFSSLLSSKALPENTSRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGTESLWGVVEGEGVVVVEVAAVELHILDLYGLQL 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g2004 377 FunFam Basic 7S globulin 42 255 - -
Lele13g2004 377 Gene3D Acid Proteases 42 250 IPR021109 -
Lele13g2004 377 SUPERFAMILY Sm-like ribonucleoproteins 254 342 IPR010920 -
Lele13g2004 377 Gene3D - 251 334 - -
Lele13g2004 377 Gene3D Acid Proteases 1 41 IPR021109 -
Lele13g2004 377 Pfam Xylanase inhibitor N-terminal 1 41 IPR032861 -
Lele13g2004 377 Pfam LSM domain 254 318 IPR001163 -
Lele13g2004 377 PANTHER ASPARTYL PROTEASE-RELATED 1 251 IPR001461 GO:0004190|GO:0006508
Lele13g2004 377 ProSiteProfiles Peptidase family A1 domain profile. 1 240 IPR033121 -
Lele13g2004 377 Pfam Xylanase inhibitor C-terminal 80 240 IPR032799 -
Lele13g2004 377 SUPERFAMILY Acid proteases 2 243 IPR021109 -
Lele13g2004 377 SMART Sm3 254 319 IPR001163 -
Lele13g2004 377 CDD Sm_D1 254 342 IPR034102 GO:0000387
Lele13g2004 377 FunFam Small nuclear ribonucleoprotein Sm D1 250 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g2004 Lele-ChrLele13 27377195 27380781 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele06g1357 06 8706542 8707600 Lele13g2004 13 27377195 27380781 CCT
Lele07g1564 07 9637722 9638726 Lele13g2004 13 27377195 27380781 CCT
Lele08g1354 08 8650102 8653633 Lele13g2004 13 27377195 27380781 CCT
Lele13g2004 13 27377195 27380781 Lele05g1490 05 9540334 9540921 CCT
Lele13g2004 13 27377195 27380781 Lele07g1550 07 9551029 9551916 CCT
Lele13g2004 13 27377195 27380781 Lele13g2004 13 27377195 27380781 ECH
Lele13g2004 13 27377195 27380781 Lele15g0401 15 2301949 2302728 hybridization
Lele13g2004 13 27377195 27380781 Lele16g0423 16 2282576 2283877 hybridization