LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele13g1987	ATGAGGGAGGGGCTTAGATCTCGCAAGCGATTGGAGAAGCCGGAGACAGACGAGGTTCGTGGAGGGGGAGTATTTCGAAAGAAAGGAAGCATCAAAAAACAGGATGCTCCTAATTCCGGTGGTGTTGATTCTTCGCATGAGAGAGAGGCTTTGGACTTGGAAGTTGCGAATAAGGAAGTGAACAAGGTAGTAAAAGAGTGTGAACCGGACTGTGACATGGAGACTGGGACGAATGTTGTGTTAGTTGAGAACGAGAACAAAATAAGGGCTTTAAATTGTGGGAATAACACTGAGAGGAAGGTGAAGAAGGAAGGGCACTCAAAAGTGCAAATAGTTGGTCGAGTATTGCGCTCACAGTTGAAGAGGGCCGATGGCATACAGGTTAAGGCAGAAGAGGCAGAGACCCATGAATGCGTTAGTAGTGGTTATGAGGAGAAGAAGATTAAGGAAGGCAATGGCAAATGGAAGTTGAAACGAAAGCGTGGGAGGCCCCCCAAAACAGGGATGACAATGCAGGTTGGTGAATTGCCACGGAAGCTAGGGAGGCCACCCAAGGCTGGGCAAAATCATAAGCTTATCAGAGTGAGACGTAGTAAAAATAGAAAGCTGGGCTTTCATAAAGATAAAAAAGGTTTAACTATTAGAGAGGGTGCCAGTAGAAGTCCAACTAAACTATGCTCAAAGAAGAGATCCTTTGGGAAGAAATTAGAAGATAATTTTTCTCCTCTCAAATCTGAGAACAATTGGGGAGCATCACCAATGAGTTCAAAGTCTTTAAATGTTCATATTGCTAAGAAAAGGCAAGCAAAGCAGCTGGTGAGGGACCAGATAATGGAACTGCTCATGGCTGCAGGCTGGACAGTTGACTATAGACCTCGAAATGTCAGAGATTACAATGATGCAGTGTATGTTAGTTTAGACGGAAAGACTCACTGGTCAATTACCTTGGCCTACAGTAGGCTGAAGAAGCATTATGAAGATGGTGATGGCGAAGGTAAGGTGTATGGGCCAGGTTTTAAATTCACACCCATACCTGAAGAAGAATTTAAAACATTAACTAAGGTGATTAGCAAGCAAAGAAAAGACAAAAAGAAATCAAAAAAGAAAGGGGTAAAGGATGGAGGTAAAGTTAATGGAGCCAATAAAAAAGCAAAAAAAGAAAGACAAGGGTCCATTTCAAGCCTGGGTAAGTCAATGAAGGGGAAGAAGAGGAAACAGTCATTTCTCGAGGAGGATTATTCTGATGTAGCATCGCCTAGCAGAATGTCGATTCTGGCCAAGGATCACAAGCGACAGAAGAAGCGTTGTGTTCTGTTGGTTCGCAATGTCGAGAAAGAGATAGATTCAGAAGTTGATGGATATTTTCCTTACAATGGAAAACGTACTCTACTTGCCTGGACGATTTATATGGGAATGGTCTTGCAAAATGGTAAGGTTCATTACACCAATCATAGAAGTAAAGGTGTGGCATTGGAGGGTAGGGTAACAGGAGGTGGCATTCACTGTAGCTGCTGTAATGAAATCATAACAGTATCAGAGTTTGAAGCCCATGCAGGAAGCAAACTCTCTGATCCATTTAGAAATATATATACAGAGGGAGGAACTTCTCTCTTGCAATGCCTGCTAGACTCGTGGAATAAACAAGATGAATCTGAATGTAAAGGTTTTAATTTCGTTGATGTTGCTGGTGAAGACCCTAATGATGACACTTGTGGTGTCTGTGGAGATGGTGGGGACCTGATCTGTTGTGATAGTTGCCCATCAACATTCCATCAAAGCTGCTTGGGTATAAAAAAGTTTCCATTTGGTGATTGGCACTGCATTTATTGCTGTTGCAAATTTTGTGGTTTGGTTGGAGGTGACAGCAAAAGGGATGATGATGGTGATATTACTGAGTCCGCATTATTTACATGCCATTTATGTGGACAAAAATATCACAGATCCTGTATTGAGGTGGATTGTACCCAGATTGATCATTCCTGTGATGCATTTTGTGGAAGCAGATGTCAAGAGTTACATGAGAGACTCAATATGCTTGTTGGTATCAAACATGAAATTGGAGATGGATTTTCCTGGACTTTAATTCAGCGATCTGATGTTGGCTCAGATGCTTCTAAGATTAAATCTCAGATGGTTGAGTGCAATTCCAAGCTAGCAGTTGCTGTATCGATAATGGATGAATGTTTCATGCCCTATATTGATCATAGAAGTGGGATTAATATGATCCACAGTATTCTTTATAATTGTGGCTCAAACTTCAACCGCCTGAACTATAGTGGATTTTTTACTGCCATTCTAGAGAGGGGAGATGAAATTATCTGTGCTGCATCTATTAGGATCCATGGGAACCAACTAGCAGAGATGCCATTTGTAGGGACCCGCTCTATGTATAGGCGGCAAGGAATGTGCCGTCGTCTTCTAAGTTCCATTGAAGATGCACTGAGCTCTCTGAATGTGGGGTTATTGGTAATACCAGCGGTAGCAGAAGTCAGAGAAACTTGGACTTCAGTTTTTGCGTTTGAGCCACTTGATCCGACAAGCAATCAAATAGTAAAGAGCTTAAATCTGTTGGTTTTCCCTCGTGTAGATATGTTACAGAAAAAGATACCGAAACCTAATTCTGCTGAAGAAAATCTGATCCCTGCTGAAGTTTCCAATCGTGAACTTCCCAAGAATATATGTCATGAGTTGAACTCTTCTGGAACGGAAGCGATCGTTTCTTCTGGGGTTTCTCCTTCAGATGCATGCCAGATAAATGATAAATACATATCTATTCAATCTGGCCCTCAGCGTCCTGAGGGCTCATTCATTGACTCACCTGTTTTTGATAGTGACACTGTAAATGGTGAATGTTCTGAAGTGGTAAAATGTCAAGTGATCTGTCAGGCTATGTATTCTAATCTGACAGTGGGAGACAAAAGTGCTACAGAAGGCCCTGATTATGTGAGCAAAGCTGATTATCAAGCTGAACACACAAATAAATGTCCGAATACTAATTCTGGTTGGACCATCCCAGCTCATAATGAGAAGACGGTAGATTCAGATAACCCATCAAACCATTGCCCAGGGTCTGAGAAGGGAAGTCAATATCTCCCAAAATCAGATGAGATAGTTAAGCATAGCATCGGTGCTGAGGATTCTCCACGCCTCTCGTCAGAAAATATTCCTCACAGATCTAAAATTGTGTCTTGGATGCGGGAATCCAAAGATTCTGATGAAATCGCATATGATAATTTGAAAATTGTAACCCCGTTGAAAGATAATGGTGGAACTTTGCATCCTGAGTCTCGGGAATTCCAGCTGGCTGAATCTGGTTTTTGTTCACATAAAAATTCCAACAGTCGTCCAGTGTGGCCGACACATTGTGGACATTGCCAATCCATACAAGTGGCCTCAGGTTCTGATATTTTGAATGGTGTCAACGTTAACAGCGAAGTGTCTAGTGTAGCTGAGTTCAATTTTCTTCCAGCTGATAGGAAGTTAGTTCTCATTAATAACCCTTGGACGGACCACTCTTCAGAGCTGCGAGATCCTGGTTTACAGGTTGATAGATCTACGCAGCGTAATGGTTCATCCCTTTGTATCCCAAAAACTGCTGGCGTGGCTCTTCCCCGCGCATCTGCTGGTGGTACTGAGATTGCTGTTAGAGAAGATGGGCAACCTTACCTTGATAGGATATGCATTTTTATGGTCAAGAGGATTGGGTATTCTCTTGCTCGTTTTAAATTGAATACAGGCGCGGTGATGCTTCTGTTGCCTTCTTTTCCCGGATATCCTACCGCCCTCCCTCAGCTGCTTCTGAATTCTATGTCTGAGCATTCAAAAGCAAAGCAAGTGGTAGCCTTGCTCAAATTGAAAGCCAGACCAGAACAGAAGAAGTTTGAGAAAAGAAAATGGAAATGCTGGAGGACCAAGAGTTTGAGAAAACGACAGGGGATGGATGGGGGTGAGGGGTCCAAGTTTGAGGTTCCCCACATGAAAATAATGGGAAGCAGCTTGGACAATCATTATCTGGCACCCACGTTCCATTTTCATTGA	4038	0.4257	MREGLRSRKRLEKPETDEVRGGGVFRKKGSIKKQDAPNSGGVDSSHEREALDLEVANKEVNKVVKECEPDCDMETGTNVVLVENENKIRALNCGNNTERKVKKEGHSKVQIVGRVLRSQLKRADGIQVKAEEAETHECVSSGYEEKKIKEGNGKWKLKRKRGRPPKTGMTMQVGELPRKLGRPPKAGQNHKLIRVRRSKNRKLGFHKDKKGLTIREGASRSPTKLCSKKRSFGKKLEDNFSPLKSENNWGASPMSSKSLNVHIAKKRQAKQLVRDQIMELLMAAGWTVDYRPRNVRDYNDAVYVSLDGKTHWSITLAYSRLKKHYEDGDGEGKVYGPGFKFTPIPEEEFKTLTKVISKQRKDKKKSKKKGVKDGGKVNGANKKAKKERQGSISSLGKSMKGKKRKQSFLEEDYSDVASPSRMSILAKDHKRQKKRCVLLVRNVEKEIDSEVDGYFPYNGKRTLLAWTIYMGMVLQNGKVHYTNHRSKGVALEGRVTGGGIHCSCCNEIITVSEFEAHAGSKLSDPFRNIYTEGGTSLLQCLLDSWNKQDESECKGFNFVDVAGEDPNDDTCGVCGDGGDLICCDSCPSTFHQSCLGIKKFPFGDWHCIYCCCKFCGLVGGDSKRDDDGDITESALFTCHLCGQKYHRSCIEVDCTQIDHSCDAFCGSRCQELHERLNMLVGIKHEIGDGFSWTLIQRSDVGSDASKIKSQMVECNSKLAVAVSIMDECFMPYIDHRSGINMIHSILYNCGSNFNRLNYSGFFTAILERGDEIICAASIRIHGNQLAEMPFVGTRSMYRRQGMCRRLLSSIEDALSSLNVGLLVIPAVAEVRETWTSVFAFEPLDPTSNQIVKSLNLLVFPRVDMLQKKIPKPNSAEENLIPAEVSNRELPKNICHELNSSGTEAIVSSGVSPSDACQINDKYISIQSGPQRPEGSFIDSPVFDSDTVNGECSEVVKCQVICQAMYSNLTVGDKSATEGPDYVSKADYQAEHTNKCPNTNSGWTIPAHNEKTVDSDNPSNHCPGSEKGSQYLPKSDEIVKHSIGAEDSPRLSSENIPHRSKIVSWMRESKDSDEIAYDNLKIVTPLKDNGGTLHPESREFQLAESGFCSHKNSNSRPVWPTHCGHCQSIQVASGSDILNGVNVNSEVSSVAEFNFLPADRKLVLINNPWTDHSSELRDPGLQVDRSTQRNGSSLCIPKTAGVALPRASAGGTEIAVREDGQPYLDRICIFMVKRIGYSLARFKLNTGAVMLLLPSFPGYPTALPQLLLNSMSEHSKAKQVVALLKLKARPEQKKFEKRKWKCWRTKSLRKRQGMDGGEGSKFEVPHMKIMGSSLDNHYLAPTFHFH	1345

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele13g1987	1345	MobiDBLite	consensus disorder prediction	1	33	-	-
	Lele13g1987	1345	PANTHER	PHD FINGER PROTEIN 12	260	1009	IPR042163	GO:0003714\|GO:0045892
	Lele13g1987	1345	MobiDBLite	consensus disorder prediction	1008	1030	-	-
	Lele13g1987	1345	SUPERFAMILY	FYVE/PHD zinc finger	562	616	IPR011011	-
	Lele13g1987	1345	SMART	PHD_3	570	611	IPR001965	-
	Lele13g1987	1345	SMART	PHD_3	612	670	IPR001965	-
	Lele13g1987	1345	MobiDBLite	consensus disorder prediction	1008	1025	-	-
	Lele13g1987	1345	SUPERFAMILY	Acyl-CoA N-acyltransferases (Nat)	754	825	IPR016181	-
	Lele13g1987	1345	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	560	672	IPR013083	-
	Lele13g1987	1345	MobiDBLite	consensus disorder prediction	1	49	-	-
	Lele13g1987	1345	ProSiteProfiles	Zinc finger PHD-type profile.	568	613	IPR019787	-
	Lele13g1987	1345	Pfam	Tify domain binding domain	493	542	IPR032308	-
	Lele13g1987	1345	MobiDBLite	consensus disorder prediction	357	371	-	-
	Lele13g1987	1345	MobiDBLite	consensus disorder prediction	372	390	-	-
	Lele13g1987	1345	CDD	PHD2_CHD_II	571	610	-	-
	Lele13g1987	1345	MobiDBLite	consensus disorder prediction	356	406	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele13g1987	Lele-ChrLele13	27277858	27284777	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele13g1987	61	916	PHD Transcription Factor Family	AT5G36670	37.621	0.0	577

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele05g1473	05	9435277	9444263	Lele13g1987	13	27277858	27284777	CCT
	Lele13g1987	13	27277858	27284777	Lele13g1987	13	27277858	27284777	ECH
	Lele13g1987	13	27277858	27284777	Lele15g0417	15	2403980	2409803	hybridization
	Lele13g1987	13	27277858	27284777	Lele16g0441	16	2378314	2384282	hybridization