Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g1974 ATGTCCAATTCTGCTTCCTTGTCTGAAGAAGCCACTGTCTCTTGTGGTACTAGAGTCCAGAACTTCACTGCATCAAGTCATATCGTTTCAAATACCATCCCTCATCAGCAGCCTCGAAAGATAAAGAAAAAAAGAAGCCTCCCTGGAAATCCAGACCCAGATGCTGAGGTGATTGCGTTGTCCCCAAAGACCCTTCTGGCCACCAATAGATATGTGTGTGAAATCTGCAACAAGGGTTTTCAGAGAGATCAAAACCTCCAGCTACACAGGAGAGGGCATAACCTTCCATGGAAGCTGAAGCAAAGGAACAGCAAGGAGGTGAAAAAGAGAGTTTATGTTTGCCCCGAGCCTTCGTGTGTTCACCACAATCCCTCGAGAGCTCTGGGTGATCTCACAGGTATCAAGAAACACTATTGCAGAAAACATGGAGAGAAGAAGTGGAAATGTCACAAGTGCTCCAAAATATACGCCGTTCAGTCAGATTGGAAAGCTCACTCCAAAACCTGTGGAACTAGAGAATACAGATGTGATTGCGGAACCTTTTTCTCCAGGAAGGACAGCTTCATAACTCATAGGGCATTTTGTGATGCATTGGCTGAAGAAAGTGTAAGACTCGCCGCTAATCAACTAGCTTCCACAAACACAATGTTATTTCAATCTCTCTTCCCTTTCCAGAATCAAATAATGATGAATCCCTGGGACCCATCTCAAGGAAACCCTAACCCTAGTAGTAACATTGATGGCGTCCAAATCAAGACCGAAGCTCAGTGTTTTCAGGTCCCATCCCTCTCTTCTCCGCCATCTCTTCTACTGCAGCAGCAGAATCAGAAGAACATGATAAACCCATTCTTGGGAACTCTCCATGTGCCCTCAATCGCCGCCACGTCGGCCCACCTGTCAGCCACTGCGCTCCTCAAAAAGGCTGCAACCGGGGGCTCCACTGCTATCACAGGTCCAGGTGCTGCCGCTGCCGCTGAAGGTGGACCACAGTCAACAATGGCTCACGTGACTCGGCCAAGCACGGGCGAGTTTGGACTTGCTACTCAACAGATCAACTCAGAGGGTCATGACTACATTGGAGGGATCATGACCCGGAACCAGAGTCAACGTCTAACCAGAGACTTCCTCGGCCTGACAGCCGATGTCGACGGCGGAAGAAATGGTGGCTCCGTGGACGTTGGCCTGAACGCGAAGGATATGCTGATGTTCACCGGGGGGTTAGAGTATGATCAGTATCTTCCATACGATCACCATCATCACTCGCTCTTCACGTCCCAACAAGATTTTGGATCCTTCGGGACAGTCACTGCCCCGGAGACGATGTGGGGTAGCTCTTGA 1338 0.4925 MSNSASLSEEATVSCGTRVQNFTASSHIVSNTIPHQQPRKIKKKRSLPGNPDPDAEVIALSPKTLLATNRYVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVKKRVYVCPEPSCVHHNPSRALGDLTGIKKHYCRKHGEKKWKCHKCSKIYAVQSDWKAHSKTCGTREYRCDCGTFFSRKDSFITHRAFCDALAEESVRLAANQLASTNTMLFQSLFPFQNQIMMNPWDPSQGNPNPSSNIDGVQIKTEAQCFQVPSLSSPPSLLLQQQNQKNMINPFLGTLHVPSIAATSAHLSATALLKKAATGGSTAITGPGAAAAAEGGPQSTMAHVTRPSTGEFGLATQQINSEGHDYIGGIMTRNQSQRLTRDFLGLTADVDGGRNGGSVDVGLNAKDMLMFTGGLEYDQYLPYDHHHHSLFTSQQDFGSFGTVTAPETMWGSS 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g1974 445 Gene3D Classic Zinc Finger 50 118 - -
Lele13g1974 445 SUPERFAMILY beta-beta-alpha zinc fingers 70 167 IPR036236 -
Lele13g1974 445 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 30 390 IPR031140 -
Lele13g1974 445 ProSiteProfiles Zinc finger C2H2 type domain profile. 71 93 IPR013087 -
Lele13g1974 445 FunFam protein indeterminate-domain 12-like 50 118 - -
Lele13g1974 445 ProSitePatterns Zinc finger C2H2 type domain signature. 73 93 IPR013087 -
Lele13g1974 445 SMART c2h2final6 112 142 IPR013087 -
Lele13g1974 445 SMART c2h2final6 71 93 IPR013087 -
Lele13g1974 445 SMART c2h2final6 147 167 IPR013087 -
Lele13g1974 445 FunFam protein indeterminate-domain 5, chloroplastic-like 125 204 - -
Lele13g1974 445 MobiDBLite consensus disorder prediction 27 53 - -
Lele13g1974 445 Pfam Zinc finger, C2H2 type 71 93 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g1974 Lele-ChrLele13 27195279 27197934 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g1974 10 409 IDZ Gene Family AT4G02670 51.707 5.08e-124 364
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele13g1974 zf-C2H2 0.003 CL0361