Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g1966 ATGGCGGGAAAAGGTGGGAAGGGTCTTCTTGCTGCAAAAACCACAGCCGCTAGCAAGGACAAAGATAAGGATAAGAAAAAGCCGGTTTCTCGTTCGTCCCGTGCCGGAATCCAGTTTCCAGTGGGTCGTATTCATAGGCAGCTGAAACAAAGGATCCAAGCGAATGGTCGTGTTGGTGCCACTGCTGCAGTTTATTTGGCGTCAATTCTGGAATATCTGACAGCAGAAGTTCTTGAGCTTGCTGGAAATGCGAGCAAAGATCTGAAGGTGAAGAGGATCACGCCCAGGCACTTGCAATTGGCTATAAGAGGAGACGAAGAGCTGGACACGCTGATCAAAGGGACCATTGCTGGTGGAGGAGTTATCCCACATATCCACAAATCCTTGATCAACAAAACTGGCAAAGAATGA 411 0.4842 MAGKGGKGLLAAKTTAASKDKDKDKKKPVSRSSRAGIQFPVGRIHRQLKQRIQANGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKTGKE 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g1966 136 FunFam Histone H2A 15 136 - -
Lele13g1966 136 MobiDBLite consensus disorder prediction 16 31 - -
Lele13g1966 136 CDD H2A 28 132 IPR002119 GO:0000786|GO:0003677|GO:0030527
Lele13g1966 136 Pfam C-terminus of histone H2A 106 135 IPR032454 -
Lele13g1966 136 PRINTS Histone H2A signature 113 131 IPR002119 GO:0000786|GO:0003677|GO:0030527
Lele13g1966 136 PRINTS Histone H2A signature 57 72 IPR002119 GO:0000786|GO:0003677|GO:0030527
Lele13g1966 136 PRINTS Histone H2A signature 27 49 IPR002119 GO:0000786|GO:0003677|GO:0030527
Lele13g1966 136 PRINTS Histone H2A signature 86 100 IPR002119 GO:0000786|GO:0003677|GO:0030527
Lele13g1966 136 PRINTS Histone H2A signature 72 85 IPR002119 GO:0000786|GO:0003677|GO:0030527
Lele13g1966 136 PANTHER HISTONE H2A 22 132 IPR002119 GO:0000786|GO:0003677|GO:0030527
Lele13g1966 136 Pfam Core histone H2A/H2B/H3/H4 15 104 IPR007125 GO:0003677
Lele13g1966 136 MobiDBLite consensus disorder prediction 1 36 - -
Lele13g1966 136 SMART h2a4 16 136 IPR002119 GO:0000786|GO:0003677|GO:0030527
Lele13g1966 136 SUPERFAMILY Histone-fold 13 113 IPR009072 GO:0046982
Lele13g1966 136 Gene3D Histone, subunit A 15 136 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g1966 Lele-ChrLele13 27151420 27152548 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele06g1296 06 8263028 8266228 Lele13g1966 13 27151420 27152548 CCT
Lele07g1499 07 9148420 9151697 Lele13g1966 13 27151420 27152548 CCT
Lele08g1293 08 8227113 8230326 Lele13g1966 13 27151420 27152548 CCT
Lele05g1434 05 9125000 9126104 Lele13g1966 13 27151420 27152548 CCT
Lele13g1966 13 27151420 27152548 Lele15g0442 15 2567107 2568218 hybridization
Lele13g1966 13 27151420 27152548 Lele16g0466 16 2542243 2543363 hybridization