Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g1963 ATGGACACCCACTCGTCTCACGCGGCCGGAACCATTCGCTCCCGTATCTCCCAATCCCCTTCTCCCTCTCACTCTGCTTCTGCATCTGCTACCTCCACCATCCACAAGCGCAAGATGGCGTCTGACGATCACGCCCCTCCCTTTCCCCCCTCTTCATTCTCCGCCGACACCCGCGACGGCGCTCTAACCTCCAATGATGACCTCGAGAGCATTTCTGCTCGCGGCGCCGATTCCGATTCCGACGATGAATCCGAGGATGCCGTTGTTGACGACGAGGAGGAGGATTACGACAATGACTCCTCCATGCGCACCTTCACTGCCGCTAGGCTTGAAAACCCCCCTTCAGCTCCGCGGAATACCAAGCTCCAAAAGGATAATGCGACGGTCAAGATAGAGAATTCGGATGGTGCCAAAGACGGTGCTACCGCCGGGACTACTATCGTGGGAACCATTCCCACCTCGACCTCAGTTCCGGGCATTATGGTAAAGGAGGACGCAACAAAGATTTTTACTGATAATCTGCAGACTAGTGGGGCATACTGTGCGAGGGAAGAAAGTCTCAAGAGAGAGGAAGAATCAGGGAAGCTGAAATTCGTATGCCTTTCAAATGATGGTGTTGATGGGCACATGGTTTGGTTGATAGGGTTGAAGAATATTTTTGCTAGACAACTTCCCAATATGCCCAAGGAATACATTGTCCGACTTGTTATGGATAGGAGCCACAAGTCTGTGATGGTTATAAGACGTAATCAAGTTGTTGGAGGAATCACATATCGCCCATATGTAACCCAAAAGTTCGGTGAGATAGCCTTTTGTGCTATAACAGCTGATGAGCAAGTAAAAGGTTACGGCACCAGACTGATGAATCACTTGAAACAGTTTGCTCGTGATGAGGATGGATTGACACACTTTCTCACATATGCTGATAATAATGCTGTTGGCTATTTTATAAAGCAGGGCTTCACAAAAGAGATTCACTTGGAGAAAGATCGATGGCAAGGGTATATAAAGGATTATGATGGAGGAATTCTCATGGAATGCAAGATTGATCCAAAGCTCCCATACACTGATTTATCAACTATGATTTGTCGTCAGAGGCAGGCTATTGATGAAAAGATAAGAGAGCTGTCAAACTGTCACATAGTTTATGCTGGATTTGATTTTCAGAAGAAAGAAGCCGGTATTCCTAAAAAGTTGATTAAAGTTGAGGACATCCCTGGTCTGAGAGAGGCTGGATGGACTCCTGATCAGTGGGGTCATTCTCGATTTAGAAGTTTAAGTGTTTCTACAGACAGCGCTACAAATCAAAAACATTTGACTGCATTTATGCGATCACTTCTAAAGTCAATGCACGATCATGCTGATGCCTGGCCATTCAGGGAACCAGTTGATGCCCGGGATGTTCCCGATTATTATGATATCATCAAAGATCCAATGGATCTGAAGACAATGTCGAAGAGGGTGGAGTCTGAGCAATATTATGTTACATTTGAGATGTTCGTTGCAGATGTCAGAAGAATGTTCGCCAACGCACGGACCTATAACTCTCCAGACACGATTTATTACAAATGCGCGACCAGGCTGGAAGCCCATTTTCAAAGCAAGGTTCAATCAGGTCTACAGTCTGGCACCAAAATTCAGTAG 1644 0.4635 MDTHSSHAAGTIRSRISQSPSPSHSASASATSTIHKRKMASDDHAPPFPPSSFSADTRDGALTSNDDLESISARGADSDSDDESEDAVVDDEEEDYDNDSSMRTFTAARLENPPSAPRNTKLQKDNATVKIENSDGAKDGATAGTTIVGTIPTSTSVPGIMVKEDATKIFTDNLQTSGAYCAREESLKREEESGKLKFVCLSNDGVDGHMVWLIGLKNIFARQLPNMPKEYIVRLVMDRSHKSVMVIRRNQVVGGITYRPYVTQKFGEIAFCAITADEQVKGYGTRLMNHLKQFARDEDGLTHFLTYADNNAVGYFIKQGFTKEIHLEKDRWQGYIKDYDGGILMECKIDPKLPYTDLSTMICRQRQAIDEKIRELSNCHIVYAGFDFQKKEAGIPKKLIKVEDIPGLREAGWTPDQWGHSRFRSLSVSTDSATNQKHLTAFMRSLLKSMHDHADAWPFREPVDARDVPDYYDIIKDPMDLKTMSKRVESEQYYVTFEMFVADVRRMFANARTYNSPDTIYYKCATRLEAHFQSKVQSGLQSGTKIQ 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g1963 547 SMART bromo_6 432 541 IPR001487 GO:0005515
Lele13g1963 547 MobiDBLite consensus disorder prediction 1 35 - -
Lele13g1963 547 ProSiteProfiles Bromodomain profile. 451 522 IPR001487 GO:0005515
Lele13g1963 547 Gene3D - 424 544 IPR036427 GO:0005515
Lele13g1963 547 Pfam Bromodomain 444 526 IPR001487 GO:0005515
Lele13g1963 547 FunFam Histone acetyltransferase KAT2A 193 357 - -
Lele13g1963 547 ProSitePatterns Bromodomain signature. 456 514 IPR018359 -
Lele13g1963 547 MobiDBLite consensus disorder prediction 56 71 - -
Lele13g1963 547 PANTHER GH11602P 52 543 IPR037800 GO:0004402
Lele13g1963 547 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 219 351 IPR016181 -
Lele13g1963 547 CDD NAT_SF 243 297 - -
Lele13g1963 547 PRINTS Bromodomain signature 454 467 IPR001487 GO:0005515
Lele13g1963 547 PRINTS Bromodomain signature 503 522 IPR001487 GO:0005515
Lele13g1963 547 PRINTS Bromodomain signature 468 484 IPR001487 GO:0005515
Lele13g1963 547 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 196 350 IPR000182 GO:0016747
Lele13g1963 547 CDD Bromo_gcn5_like 439 537 - -
Lele13g1963 547 Pfam Acetyltransferase (GNAT) family 243 321 IPR000182 GO:0016747
Lele13g1963 547 SUPERFAMILY Bromodomain 422 537 IPR036427 GO:0005515
Lele13g1963 547 MobiDBLite consensus disorder prediction 1 100 - -
Lele13g1963 547 Gene3D - 192 356 - -
Lele13g1963 547 MobiDBLite consensus disorder prediction 79 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g1963 Lele-ChrLele13 27117832 27123552 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR GNAT Lele13g1963 Bromodomain 2.1e-22 No_clan