Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g1958 ATGGAGAGTTCATTAGTATCAATGGGTGAGCTGAACCTGAAGGACACAGAGCTAAGGTTGGGATTGCCAGGCAGCGACGAGACAGAGAAACGTTGCATTGTTGGAAGGAAAAGGAAATATTCAGCCGAGGAAACAAGTCGTGAGGAGAAATCAACAGGCAAGAGTAGTGATGCTAAAAGTGATCACGACCAGTCAGACAACGGCCCACCGGCAAAGGCACAAGTAGTGGGATGGCCACCAGTGAGAAGTTTCAGGAGGAATGTGCAACAAAAGAAGGAAGAAGAGGGTGGAAGGTACGTGAAAGTGAGCATGGCTGGGGCTCCATACTTGAGGAAGACAGATGTGAAGGTTTATAAGAGCTACCCAGAAGTGCTCAAGGCGCTGGAAAATATGTTCAAGTGCACTTTCGGTGAATATTCAGAAAGGGAGGGATACAATGGATCTGAATATGTTCCAACGTATGAAGACAAAGACGGTGACTGGATGCTTGTTGGAGATGTTCCATGGGAGATGTTCATATGTTCATGCAAGAGGCTCAAAATCATGAAAGCATCTGAAGCTAAGGGTTTGGGTTCTCTATGA 582 0.4622 MESSLVSMGELNLKDTELRLGLPGSDETEKRCIVGRKRKYSAEETSREEKSTGKSSDAKSDHDQSDNGPPAKAQVVGWPPVRSFRRNVQQKKEEEGGRYVKVSMAGAPYLRKTDVKVYKSYPEVLKALENMFKCTFGEYSEREGYNGSEYVPTYEDKDGDWMLVGDVPWEMFICSCKRLKIMKASEAKGLGSL 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g1958 193 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 10 188 IPR003311 GO:0005634|GO:0006355
Lele13g1958 193 Gene3D - 91 192 - -
Lele13g1958 193 MobiDBLite consensus disorder prediction 20 66 - -
Lele13g1958 193 ProSiteProfiles PB1 domain profile. 97 189 IPR000270 GO:0005515
Lele13g1958 193 Pfam AUX/IAA family 36 191 IPR033389 -
Lele13g1958 193 SUPERFAMILY CAD & PB1 domains 94 183 - -
Lele13g1958 193 FunFam Auxin-responsive protein 92 193 - -
Lele13g1958 193 MobiDBLite consensus disorder prediction 1 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g1958 Lele-ChrLele13 27091527 27092216 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g1958 89 192 B3 DNA Binding Superfamily AT2G46530 34.615 3.26e-11 59.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lele13g1958 AUX_IAA 2.2e-53 CL0072